<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19234

Description Uncharacterized protein
SequenceMNSYDTKSTIQVPGRVTLNEQKRQSWLCELADDLVPLLKLSKNVPHGFKGEKLLEMLVSRKIECSRATWYIQLIGLDEINAQRNKNDLSHIQYTLSFTSKPNQSLPNFSLAPVYASEDNRVISHLDAEPNHIHARRLFESLDREIINQLQPVTLESLIQFSANINLFDPDISKVGPIARLELATKAFKILEDRQELTAESYSNLIIFLGFSNKLPQATALFESYKQSPFNPDSQNSTQVQALKNPSSLTLVAPDSLTVQKCQSEPANKDSLMRAPLVARDTFSAVTLLEESLPLTVDSLSTFKSSIKHILKFILGLIRSEDYSSASNFHIQVLCRLLTWFIIPDSRCSTASMLARQLKIRLVACRGTNVPKNCANVVVLIHAIATFQAFNGYLRPRIIKAQDDKRLGRTSGSSTSRLSGMLAAFATVAGLPASSSSSPSTHLEDSGFILLSRTEATESAQPSSLQSTSISTQSTQNNSLAGLVASAASSRSSQPSYAAAVKSPPGYQLVPFGSLQSAQPPQQYSSIAEIYPGQPASAPWSPSLGPIPPNGYARSPQLYSLNTSYPSPPISSSYPPIAPRGSRVLVPTADHLGSRTGCRTSLLIATLVTIPITLPRRLKLRRLAATIITPLPALLTVLPLNGGTPIGRRVAFTQIGGTHPRSNPAISGDTGP
Length671
PositionKinase
OrganismPuccinia coronata var. avenae f. sp. avenae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Pucciniaceae> Puccinia.
Aromaticity0.06
Grand average of hydropathy-0.144
Instability index57.94
Isoelectric point9.49
Molecular weight72888.35
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19234
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.83|      30|      31|     519|     548|       2
---------------------------------------------------------------------------
  461-  504 (27.89/ 7.96)	PSSlQSTSIStqstqnNSLAGLVASAASSrssqPSYAAAvksPP
  519-  548 (62.18/25.76)	PPQ.QYSSIA......EIYPGQPASAPWS....PSLGPI...PP
  554-  578 (46.75/17.75)	SPQ.LY.SLN......TSYPSPPISSSY.....P...PI...AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.38|      27|      27|     309|     335|       4
---------------------------------------------------------------------------
  309-  335 (46.43/27.28)	ILKFILGLIRSEDYSS.ASNFHIQ.VLCR
  337-  365 (38.96/21.82)	LTWFIIPDSRCSTASMlARQLKIRlVACR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.35|      15|      20|     598|     617|       6
---------------------------------------------------------------------------
  598-  617 (13.50/18.51)	RTslLIATLVTiPitLPRRL
  620-  634 (25.85/12.10)	RR..LAATIIT.P..LPALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.74|      10|      26|     262|     271|       8
---------------------------------------------------------------------------
  262-  271 (17.81/11.09)	QSEPANKDSL
  290-  299 (16.93/10.16)	ESLPLTVDSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19234 with Med12 domain of Kingdom Fungi
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