Description | Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDAFTSITRRSCARGLDQLEWMKEVKSILNIIPSSSSSSSREQATALIDLVLSTNPISVRLLTYYRAALNTLIDPSDAATHLITITPTVPLPLVRAELINQIALPLINSHPHLKCQNPSHAITLLNLLLNLINNQHLNHSPILTLTENLIKPLTHFILSYPPNCFIQSNPQAVQEAIQSITNTLDHPSTSTINNYQLPSILRHLSPSTAKQLALSSSQQPTQSPTTTTTTTTTTTTTTTTTSSSSSSASALIAYILLTPGASALASDQTTPSLILSRIISFALSDQPPHSNFILELLLAAIKLGNSHPPTPFQAPSKTDTLSDLNNNNNNNNNNNNNDEDDPYLENDKMCWKALLAGGRLAELIRSAIDSDAIKSQPEVMVQLLTITHLEILSQHIITQKKSIPDVQHQPISQTDEDVHMDMDPTVPAVEYTTRHHLWFALLSSLCSNQLIIPEDIEKLEQSNSAPNHLVLGHHSDVELGLQPLYESLGIDKQKPISELAGKLQESIMTATMSFDLSTCISLTKAISSLDSLCTILIWLQPRNILGPIRTLLDDWNNIRNNNNQVINNSDNDESSSGSEFEKFGGLLGWLQGVVGRFGLMSQLGYHLGTTKGFTIHYLSNPSTAYPLSSLPSTHTTTLASWIEALYGSSGIPDDLLSNTDPRIFFTISATLFKQSFDALTSGLIDLQTFRDGLSYFEHKLLIGGCAVGVVGWLLNELTAAGSSISATSFPTALLEILQAILLSDSITSTALRLVSARSLALLRGFDHSFSRAPPDHLGPGADLNRRVQLDLGAIERRLTVQPVSEMILPTGFLAFDFGRGQAVVRWTDALRLAVQMAVDGDRERPGPDPTIALWSLLPHILKAVSVREFVQMTIAAAVEPSRSTGEDHGLVVGDDTYPARLGVRVQKAWDAATYRRVERAVGLAVDILTWMTDDIHGPSSGPLSLVLEELFQRWGARLGTTSSVEAAEVERDIVLGCLDRLESWELVTARDPHKKQQQQSASQENSNQAVASGLSDPTPLQTKDQDSAPDPPLPVITDGFRKACLESLRREKLRSLGLVIKPEPPTPPGPRLDLASESAAVSGSAAAGRDEEARDMDASGPAPAKDGESGEDASGGQEEEKGGEAEAGKEEELPAAAEQAMEVVGESDTLAEKEKKDQLQGQANEQSGDGCHESEAGEGEDKMDEGAVEAVLAGRAVGERAGGEWKRVHFRDEAGAARTGDEGEKTSRDTPPSPPLKKKKGRPADPQQQDPPSALDWIVASLAVAPVPARPPYTQLPPAAHPDLATLVRDHLAPTLPYKLVGIIPR |
Length | 1306 |
Position | Tail |
Organism | Puccinia coronata var. avenae f. sp. avenae |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Pucciniaceae> Puccinia. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.248 |
Instability index | 49.26 |
Isoelectric point | 5.05 |
Molecular weight | 141218.34 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP19227 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 452.85| 174| 202| 34| 230| 1 --------------------------------------------------------------------------- 34- 152 (122.59/126.37) ..........................................................................................SSSSSSSreqATALIDLVLSTnPISVRLltyyraalntlidPSDAATHLITITPTVPLPL....VRAELINQI...ALPLINSHPHLKCQNPSHAITLLNLLLNLINNQHLNHS....PILTLTENLIKP 153- 353 (262.80/224.10) LTHFILSYPPNCFIQSNPQAVqeaIQSITNT.LDHPSTSTINNYQ.LPSIlRHlSPSTAKQLALSSSQQPTqSPTTTTTTttttttttttTSSSSSS...ASALIAYILLT.PGASAL.............ASDQTTPSLILSRIISFALsdqpPHSNFILELllaAIKLGNSHPPTPFQAPSKTDTLSDLNNNNNNNNNNNNNdeddPYLENDKMCWKA 360- 433 (67.46/38.31) LAELIRSAIDSDAIKSQPEVM...VQLLTIThLEILSQHIITQKKsIPDV.QH.QPISQTDEDVHMDMDPT.VPAVEYTT............................................................................................................................................ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 233.38| 69| 202| 1007| 1075| 2 --------------------------------------------------------------------------- 889- 948 (50.15/20.33) .....................GLVVGDD..TYPA.RLGVRvqkawdaatyrrvERAV..GLAvDILTWMTDDIHGPSSGPLSLVLE 955- 1038 (99.30/47.37) GARlgtTSSVEAAEVERDIVLGCLDRLESWELVTAR.DPHkkqqqqsasqensNQAVASGLS.DPTPLQTKDQDSAPDPPLPVITD 1039- 1112 (83.92/38.91) GFR...KACLESLRREKLRSLGLVIKPEPPTPPGPRLDLAsesaavsgsaaagRDEEARDMD.ASGPAPAKDGESGED........ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 77.43| 16| 19| 1218| 1233| 3 --------------------------------------------------------------------------- 1200- 1216 (22.43/ 8.36) RAGGEWKRVHfRDEAGA 1218- 1233 (28.29/12.25) RTGDEGEKTS.RDTPPS 1239- 1253 (26.71/11.20) KKGRPADPQQ.QD.PPS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 106.51| 30| 50| 586| 615| 5 --------------------------------------------------------------------------- 586- 615 (53.79/29.25) LLGWLQGVVGRFGLMSQLGYHLGTTKGFTI 638- 667 (52.73/28.54) LASWIEALYGSSGIPDDLLSNTDPRIFFTI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.46| 14| 15| 1164| 1177| 6 --------------------------------------------------------------------------- 1164- 1177 (25.90/15.25) NEQSGDGCHES.EAG 1180- 1194 (18.56/ 8.99) EDKMDEGAVEAvLAG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 63.67| 21| 24| 1113| 1133| 8 --------------------------------------------------------------------------- 1113- 1133 (35.20/26.48) ASGGQEEEKGGE....AEAGKEEEL 1135- 1159 (28.47/19.89) AAAEQAMEVVGEsdtlAEKEKKDQL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) KRVHFRDE 2) PLKKKKGRPADPQQQ 3) SALDWIVASLAVA 4) YKLVGII | 1206 1235 1253 1298 | 1213 1249 1265 1304 |
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