<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19209

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSFHHPHTPQTPSQPSPGITDPLASTTASMTSNTSALPTPAHSVTGASSQPSDITYETSMMDAGEELTPNKRKRLMEDLGDHAVKKMHLDTPPLGIEDIHLDVGEKYLLCNRPVRVPQYSTAEDLFAMFDLTGLATKMAREKPNGEKNALRKSFKSQVKELAIDGAYDTKKDERQDNDPDGFFAMLNLPEDVWYAHHVKGQEIQDGFSETTLASLPKALSMLKGKVRKEHWDPYILGSLESPAQLIDNSSNTANSAKASELNTPAGSTPAASARLKVTGQALAPGQDPSRPRRSIKKRSYGDASFEGYGEGYPDDEGGYSTGDGEDRNGTKRRKKNSSAPQPFSQIRQQGYGPGMVGA
Length358
PositionHead
OrganismLomentospora prolificans
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Microascales> Microascaceae> Lomentospora.
Aromaticity0.06
Grand average of hydropathy-0.809
Instability index46.60
Isoelectric point6.09
Molecular weight38892.79
Publications
PubMed=28963165

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP19209
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.90|      26|      37|     279|     305|       1
---------------------------------------------------------------------------
  279-  305 (42.54/27.97)	GQALAPGQDPSRPRRSiKKRSYGDASF
  318-  343 (47.36/27.10)	GYSTGDGEDRNGTKRR.KKNSSAPQPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.63|      33|      39|      42|      74|       3
---------------------------------------------------------------------------
   42-   74 (56.69/32.37)	HSVTGASSQPSDITYETSMMDAGEE.LTPNKRKR
   82-  115 (53.94/30.50)	HAVKKMHLDTPPLGIEDIHLDVGEKyLLCNRPVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.14|      17|      21|     199|     215|       4
---------------------------------------------------------------------------
  199-  215 (27.86/15.71)	KGQEIQDGFSETTLASL
  223-  239 (31.28/18.38)	KGKVRKEHWDPYILGSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19209 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSLESPAQLIDNSSNTANSAKASELNTPAGSTPAASARLKVTGQALAPGQDPSRPRRSIKKRSYGDASFEGYGEGYPDDEGGYSTGDGEDRNGTKRRKKNSSAPQPFSQIRQQGYGPGMVGA
2) MSFHHPHTPQTPSQPSPGITDPLASTTASMTSNTSALPTPAHSVTGASSQPSDITYETSMMDAGEELTPNKRKRLMEDLGDHAVKKMHLDT
237
1
358
91










Molecular Recognition Features






MoRF SequenceStartStop




1) EGYGEGYPD
2) PFSQI
306
342
314
346