<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19198
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MAMQTDNPVDSNGMPFLENSLPAVLPDVDDLFGGEVPVNLALSPPTKELRQRIDDIRRRGCCQTVAWSKAGIIASLTPDGHFVELRFLRCNPDDGSWQLSEPTRCDLVVGSDSIPLAHLAWSSTAIPELAILDSVGRLALLTFSNAINRPYLTRRWDPDPIDDLNAVVGCHWLSLMPPSRQFNVLHGPAIKDSNRYRYDTSFIHSFGPFHPNPSKSSLLCVTTNGQLKLFYSQSNNRIEETTIDIERIGSTDDMITHASICTDKNFLYLILATASRQLRLVKLTLQWGPSQGDKQPISSPLSPTIVERHLASTSWHQYGPNDSAFDAAMTQVSHLEILPSTLENDAQSWSPPLILTVRSYLPSPDSPYPEAQSIIDRWQVLTDQPQTIHPAFSSLGGQKQNSVPDIQPTTRLQRGEPLTFNKVIVGLQILQFGKVICVAFSDGTVEYRDRLTLSEIYNEPNTERIMNPHQVGFAFPDPTPCLQLVLSPTNCSLVQITPDGELIWKYLQYAQGDIGNSTQDPQYSPVIAALTVATGAAIYYVSSFDDVLAVARPFADKKRFTYDFANDVVSMLKITVDYSEDSHHDNLVRNTHLQMCLSIIGNLGFHGQYDARTFGSKFATLALNARNIVILVTIASNTPPNLREKFSPLDEPEVVEALAGCAKWSIDLLSWLADCLFSLLDDPKFTSLVKDQSKFAAVSAYLQEKNDVALHLLLCSSTRGLLVAVCRRLQHLDTLGNRVIGYWETQQAQADGKAPNLSLHRAYQRMQQITSSSLVKAQEFEKLLTQLGADIRSTYSTMLTAMVSKAAGQPPPQAGAAISKHLDAAVKQAQMQCELGMLLGGTIHPMFRKALGQLFANHLAGFKVTVDPAKLFFHDYSLLEVAADSPESFAKKRAEAIYVDMFRKVEITPGQTEQQVDGGRVNGPVWSGQWRRCVRCASVMEDVSSPRPGFSYVLTQQRKCACGGSWGLLPKGELIS |
Length | 976 |
Position | Tail |
Organism | Lomentospora prolificans |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Microascales> Microascaceae> Lomentospora.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.166 |
Instability index | 43.71 |
Isoelectric point | 5.93 |
Molecular weight | 107935.65 |
Publications | PubMed=28963165
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP19198
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 142.08| 41| 418| 61| 102| 2
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61- 102 (72.24/59.64) CCQTVAWSKAGIIASLTPDGHFVeLRFLRCNPDDGSWQLSEP
481- 521 (69.83/52.50) CLQLVLSPTNCSLVQITPDGELI.WKYLQYAQGDIGNSTQDP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 109.74| 35| 130| 11| 49| 3
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11- 49 (55.15/41.84) SNGM..PFLENSLPavlPD.VDDLfGGEVPVN.LALSPPTKEL
144- 182 (54.60/30.23) SNAInrPYLTRRWD...PDpIDDL.NAVVGCHwLSLMPPSRQF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 373.74| 110| 453| 287| 398| 4
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287- 398 (192.05/140.03) WGPSQGDKQPISSPLS.PTIVERHLASTSWHQYGPNDsaFDAAMTQV.....SHLEILPSTLENDAQSWSPPLI.LTVRSYLPSPDSP.YPEAQSIIDRWQV.....LTDQPQTI..HPAFSSLGGQ
639- 688 (23.24/ 7.79) ......................................................................PP....NLREKFSPLDEPeVVEALAGCAKWSIdllswLADCLFSLldDPKFTSL...
743- 853 (158.44/109.09) WETQQAQADGKAPNLSlHRAYQRMQQITSSSLVKAQE..FEKLLTQLgadirSTYSTMLTAMVSKAAGQPPPQAgAAISKHL...DAA.VKQAQMQCELGML.....LGG...TI..HPMFRKALGQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 82.93| 24| 290| 245| 268| 5
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245- 268 (44.22/31.96) IERIGSTDDMITHASICTDKN.FLY
538- 562 (38.70/27.03) IYYVSSFDDVLAVARPFADKKrFTY
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