<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19162

Description Uncharacterized protein
SequenceMNYVDQQQFIMQQGQRMQNPRMISVPTTVTPQHMHRQQRYGMAMMQPGQQPVQIVSGQYVQNPQMQPRLLTISDALSRLPPEVQQMAQQQINAETNAEKKRQVALGFIQGRVRLTQQYPGQGTMNTGGMMISVGLNQQVGMSQGNTQMVRMGTVQSGPVPYPAQNVSLQTGVGQMGPTQVSVQRMPNHYMASGMSAAQNIQYQSQDLGNAQNYNSQQQVTLTQPSSVGSAVQQTSSLHHKGPSSVPSAIYTQHHPENSAAAHSTTGSEGDKSSDEPLYSQKLELLKPYHEHIKRLLERNRLDGQAPKSKFERLLEIMENRRKVELKLLEKLVVSVRNLIERDSLCFPLIDALRLESADATKTPLPDPWGDFHQYAIKIPEKVMSIIKEEKTKSREEKDVIPIKRIKKEEGSDERIAVICQDGSRLELSQEASDQLRPYNYKFDPEFIPISDDCTEIQVFIENDILLVPPLRLVIPLNYPESRASIWRDRWSYGGVSLVDINTQFDKRLNMAVNCRTITEIVNAWKLASLHVLKIGSSSAST
Length541
PositionTail
OrganismOnchocerca volvulus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.05
Grand average of hydropathy-0.568
Instability index46.40
Isoelectric point8.65
Molecular weight60913.66
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19162
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.75|      15|      15|     216|     230|       1
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  216-  230 (27.43/16.70)	QQQVTLTQ..PSSVGSA
  232-  248 (24.31/13.99)	QQTSSLHHkgPSSVPSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.35|      13|      15|     121|     134|       2
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   42-   54 (21.65/ 9.78)	MAMMQPGQQPVQI
  121-  133 (23.70/ 6.49)	QGTMNTGGMMISV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.19|      13|      17|     287|     300|       3
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  287-  300 (20.47/21.61)	PyHEHIKRLLE..RNR
  306-  320 (18.72/12.45)	P.KSKFERLLEimENR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.11|      12|      46|      14|      25|       4
---------------------------------------------------------------------------
   14-   25 (23.88/12.87)	GQRMQN....PRMISV
   57-   72 (17.23/ 7.47)	GQYVQNpqmqPRLLTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.24|      13|      16|     152|     164|       5
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  152-  164 (24.47/11.78)	GTVQSGPVPYPAQ
  193-  205 (19.77/ 8.20)	GMSAAQNIQYQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.94|      14|      15|     336|     350|       8
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  336-  350 (21.36/16.46)	RnLIERDSLCFPLID
  353-  366 (24.58/13.96)	R.LESADATKTPLPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.05|      14|      26|      75|      89|       9
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   75-   89 (20.15/15.38)	ALSRLPPEVqQMAQQ
  104-  117 (23.90/13.26)	ALGFIQGRV.RLTQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19162 with Med15 domain of Kingdom Metazoa
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