<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19119

Description Mediator complex subunit 25
SequenceFMGGGGESCSLIAEGLSTALQLFDDFKKMREQIGQTHRVCLLICNSPPYLLPAVESTTYSGCTTENLVQQIGERGIHFSIVSPRKLPALRLLFEKAAPPALLEPLQPPTDVSQDPRHMVLVRGLVLPVGGGSAPGPLQPKQPVPLPPAAPSGATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPPLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIMGNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQVQQQKLEQQQRGMGGQQAPPGLGPILEDQARPSQNLLQLRPPQPQPQGTVGASGATGQPQPQNTTQPPPGAPQGPPGAASGPPPPGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGAPALLPPPHQGLGQPQLGPPLLHPPPAQSWPAQLPPRAPLPGQMLLSGGPRGPVPQPGLQPSVMEDDILMDLI
Length645
PositionUnknown
OrganismSaimiri boliviensis boliviensis (Bolivian squirrel monkey)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Platyrrhini> Cebidae> Saimiriinae> Saimiri.
Aromaticity0.04
Grand average of hydropathy-0.299
Instability index63.17
Isoelectric point9.49
Molecular weight67369.92
Publications









Function






Annotated function


GO - Cellular Component
nucleoplasm	GO:0005654	IEA:Ensembl

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19119
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     429.31|      62|      62|     137|     198|       1
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   52-  119 (52.42/ 7.02)	PAVESTtyS....GCTTENLV.....QQIGeRGihfsiVS.........PR...K......LPalrllfeKAAP.P...ALL..EPLQPPTDVsqD.PRHMV
  134-  172 (82.74/15.98)	PGPLQ............................................PK...Q..PV.PLP.......PAAP.S.G.ATLSAAPQQPLPPV..P.PQYQV
  173-  233 (95.78/19.84)	PGNLSA..A....QVAAQNAVEAAKNQKAG.LG.....PR.........F....S..PItPLQ.......QAAP.GvG.PPFSQAPAPPLPPG..P.PG..A
  234-  281 (65.20/10.80)	PKPPPA..S....QPSLVSTVAPG....SG.LA...ptAQ..............................PGAP.S.M.AG.TVAPGGVSGPS..P.AQ...
  491-  530 (63.64/10.34)	QGTVGA..S....GATGQ....................PQ.........PQnttQ..P....P.......PGAP.Q.G.P.....PGAASGPP..P.PG...
  559-  632 (69.53/12.08)	P.PPQA..SlhhlQPPGAPALLPPPHQ..G.LG....qPQlgppllhppPA...QswPA.QLP.......PRAPlP.GqMLLSG...GPRGPV..PqPGLQ.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.01|      22|      65|     468|     489|       2
---------------------------------------------------------------------------
  468-  489 (43.12/18.21)	PILEDQ...ARPSQNLLQLRPPQPQ
  531-  555 (38.89/15.62)	PILRPQnpgANPQLRSLLLNPPPPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.62|      22|      25|     362|     385|       3
---------------------------------------------------------------------------
  362-  385 (34.11/31.28)	LFrnSRMVQF.HFTNKDLESLKGLY
  391-  413 (37.50/26.63)	GF..AGCVHFpHTAPCEVRVLMLLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.71|      15|      24|     320|     334|       5
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  320-  334 (28.29/19.98)	KLTRSL.PCQVYVNHG
  345-  360 (21.42/12.97)	KLIMQLiPQQLLTTLG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19119 with Med25 domain of Kingdom Metazoa
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