<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19100

Description Uncharacterized protein
SequenceMTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPAHQHEVALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRPDRLGSRKRRGDQRDLGHPGPPPKASKVTHDSLVPNSSPLPTNGISGSPESFPGSLDGSGHAGPEGSRLERGENDKHSGKIPINAVRPHTSSPGLSKPPGPCLQAKASVLQQLDRVDETSGPPHPKGPPRCSFSPRNSRHEGSFTRQQNLYVPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSSESPVCWLEQPESHQRLAGSGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAKAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQPSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRRGARQLHVLVPQSPPTDLPGLTREVTQDDLNRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length600
PositionUnknown
OrganismSaimiri boliviensis boliviensis (Bolivian squirrel monkey)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Platyrrhini> Cebidae> Saimiriinae> Saimiri.
Aromaticity0.04
Grand average of hydropathy-0.856
Instability index63.18
Isoelectric point9.51
Molecular weight65493.79
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19100
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      98.85|      23|      42|     114|     137|       1
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  114-  130 (22.97/ 6.49)	........................EVGAAGPP....RSIHDLKSR
  131-  175 (18.93/ 8.05)	NDlQRLPgqrpdrlgsrkrrgdqrDLGHPGPPpkasKVTHDSLVP
  176-  195 (32.64/12.81)	NS.SPLP.................TNGISGSP....ES...FPGS
  214-  237 (24.31/ 7.58)	ND..KHS..............gkiPINAVRPH....TSSPGL.SK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     410.90|     117|     120|     260|     379|       2
---------------------------------------------------------------------------
  260-  366 (174.60/74.94)	....................SGPPHPKGPPRCS..FSPRNSRHEGSFTRQQNLYVPKGSVPSPSP............................RPQALDATQVP.SPL.....PLAQPSTPPVRRLELLPsSESPVcWLEQPeSHQRLAGSGCKAGL.SPAEPL
  367-  475 (140.36/52.36)	LSRAGFSPDSSKA.dsdaasSGGSDSKKKKR....YRPRD......YTVNLDGQVAKAGV.................................KPVRLKERKLTfDPMtrqikPLTQ..KEPVR.......ADSPV.HMEQP.SRTELDKQEAKASLqSPFEQT
  480-  595 (95.95/33.25)	LSRNEIIQSYLSRqssllssSGAQTPGAHHFMSeyLKQEESTRRGA..RQLHVLVPQ.SPPTDLPgltrevtqddlnriqasqwpgvngcqdtQGNWYDWTQCI.SLD.....PHGDDG.....RLNILP..................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19100 with Med26 domain of Kingdom Metazoa
Unable to open file!