<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19074
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHQEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVAAADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRPVDEPAIKRPRTAGPAVHFKAMQLSWTSLALVGIDNQGKLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDETLVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLQLDGLARAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP |
Length | 834 |
Position | Tail |
Organism | Saimiri boliviensis boliviensis (Bolivian squirrel monkey) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Euarchontoglires> Primates> Haplorrhini> Platyrrhini> Cebidae>
Saimiriinae> Saimiri.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.041 |
Instability index | 48.97 |
Isoelectric point | 7.69 |
Molecular weight | 92513.54 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
|
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP19074
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 102.24| 27| 132| 22| 48| 1
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22- 48 (53.17/30.36) EKWSKSTHCPSVPLACAWSCRNLIAFT
157- 183 (49.06/27.45) EKFSRVKFSPSLTLFGGKPMEGWIAVT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.01| 14| 131| 324| 342| 4
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324- 337 (24.42/21.88) QISPVVGDKQPTIL
350- 363 (22.59/ 6.67) RVSAVALPKLPISL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 187.32| 61| 379| 375| 445| 5
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375- 445 (90.63/94.91) QF..YPGL...GLALAfhDGSVHIVH..RLSLQTmavfYSS....AAPRPVDEPAIKRP.RTAgpAVhfKAMQLSWTSLALVG
751- 823 (96.69/66.82) QFgrAPTLqldGLARA..PGQPKIDHlrRLHLGA....YPTeeckACTRCGCVTMLKSPnRTT..AV..KQWEQRWIKNCLCG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 126.52| 37| 188| 446| 482| 6
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446- 482 (66.10/43.49) IDNQGKL.....SVLRLSPSMGHPLEVGLALRHLLFLLEYCM
632- 673 (60.42/39.07) LPNQGSLlrpghSFLRDGTSLGMLRELMVVIRIWGLLKPSCL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 121.35| 37| 200| 72| 110| 7
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72- 110 (64.87/45.73) DLHSipSEHQEAITCLEW...DQSGSRLL..SADADGQIKCWSM
270- 311 (56.48/33.27) DLNR..KDRFPAITHLKFlarDMSEQVLLcaSSQTSSIVECWSL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 70.14| 20| 25| 692| 714| 13
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692- 714 (33.16/27.74) LLTKLWICCRDEGPASepdETLV
720- 739 (36.97/21.64) LPSQLLIPSLDWLPAS...DGLV
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