<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19054

Description Transducin beta like 1 X-linked receptor 1
SequenceMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
Length427
PositionTail
OrganismRhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Colobinae> Rhinopithecus.
Aromaticity0.07
Grand average of hydropathy-0.397
Instability index26.76
Isoelectric point5.72
Molecular weight46163.80
Publications
PubMed=25362486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19054
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     427.08|      40|      40|     235|     274|       1
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   55-   94 (41.27/27.48)	..ANNHTDM.MEVdgdV..EIPPNKAV.VLRGHESEVFI.............CAWNPVS
  115-  150 (42.78/28.80)	S.TSGSTQLVLRH...CirEGGQDVP..S....NKDVTS.............LDWNSEG
  153-  191 (59.93/43.89)	L.ATGSYDGFARI......WTKDGNLASTLGQHKGPIFA.............LKWNKKG
  193-  230 (20.30/ 9.04)	F...........I...L..SAGVDKTTIIWDAHTGE..AkqqfpfhsapaldVDWQ...
  235-  274 (69.95/52.70)	F.ASCSTDMCIHV...C..KLGQDRPIKTFQGHTNEVNA.............IKWDPTG
  277-  316 (71.17/53.78)	L.ASCSDDMTLKI...W..SMKQDNCVHDLQAHNKEIYT.............IKWSPTG
  328-  367 (60.77/44.63)	L.ASASFDSTVRL...W..DVDRGICIHTLTKHQEPVYS.............VAFSPDG
  369-  408 (60.90/44.74)	YlASGSFDKCVHI...W..NTQTGALVHSYRG.TGGIFE.............VCWNAAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19054 with Med16 domain of Kingdom Metazoa
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