<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19052

Description Mediator complex subunit 13 like
SequenceMDKNFVRIGKWFVRPYEKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQSSPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEESKEEDDLGYDDDFPVAVEVIVGGVRMVYPSAFVLISQNDIPVPQSVASAGGHITVGQQGLGSVKDPSNCGMPLTPPTSPEQAILGESGGVQSAASHLVSQDGGMITMHSPKRSGKIPPKLHNHMVHRVWKECILNRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSCSCSRHKLLKRCAVGPNRPPTMSQPGFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDAPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLELQQLSTLDDRTVLVGQRLPLMAEVSETALYCGIRPLNPESSEKWWHSYRLPPSDDAEFRPPELQGERCDAKMEVNSESTALQRLLAQPNKRFKIWQDKQPQMQPLHFLDPLPLSQQPGDSLGEPTTPMKMGLAPTMMICLLTFHSQMIWTMILAY
Length609
PositionMiddle
OrganismRhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Colobinae> Rhinopithecus.
Aromaticity0.06
Grand average of hydropathy-0.541
Instability index73.06
Isoelectric point6.36
Molecular weight67528.20
Publications
PubMed=25362486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19052
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     223.48|      59|      93|     292|     352|       1
---------------------------------------------------------------------------
  193-  258 (81.16/42.02)	PPTSPEQailGESGGVQSAASHLVSQDGGMITMHSPKRSGKIP..PKLH................................nhMVHRVWKECILnrTQSK
  259-  306 (64.20/31.54)	RSQMSTP...TLEEEPASNPATWDFVDPTQRVS...............................................cscSRHKLLKRCAV..GPNR
  307-  400 (78.11/45.24)	PPTMSQP...GFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQkrPLIPfhhrpsvaeelcmeqdapgqklglagidsslevsSSRKYDKQMAV...PSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     244.43|      75|      93|       8|      84|       2
---------------------------------------------------------------------------
    8-   84 (126.84/106.37)	IGKW.FVRPYEKDEKPVNKSE.HLSCAFTFFLHGESnVCTSVEIAQHQPIYLINEEHIHMAQS.SPAPFQVLVSPYGLnG
  102-  179 (117.58/88.29)	IEEWqYFYPMVLKKKEESKEEdDLGYDDDFPVAVEV.IVGGVRMVYPSAFVLISQNDIPVPQSvASAGGHITVGQQGL.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.22|      11|      14|     469|     480|       3
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  469-  480 (16.63/12.49)	GQRlPLMAEVSE
  486-  496 (21.59/11.65)	GIR.PLNPESSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.98|      14|      16|     422|     435|       5
---------------------------------------------------------------------------
  422-  435 (27.17/12.13)	PPTLSPQP..RGQETE
  439-  454 (22.81/ 9.04)	PPSVPVNPalYGNGLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19052 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ECILNRTQSKRSQMSTPTLEEEPASNPATWDFV
2) ITVGQQGLGSVKDPSNCGMPLTPPTSPEQAILGESGGVQSAASHLVSQDGGMITMHSPKRSGKIPPKLH
3) KRCAVGPNRPPTMSQPGFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDAPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYG
249
171
298
281
239
450










Molecular Recognition Features






MoRF SequenceStartStop




NANANA