<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18960

Description Uncharacterized protein
SequenceLWSPPPKKYFAGSPGFSFPGLCTESSLQNDGTVFDGRPTESLSLIDAVIPDVVQMQQQAFGEKLTQQQASAAAMEASAMAKVAPITPATVSQQNPPKNQEATVNGEQNGARAINNHSKDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGDHDVTSNKDVTSLDWNSDGTLLATGSYDGFARIWTENGNLTSTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMYIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHNLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDMEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYQGTGGIFEVCWNAQGDKVGVSASDGSVCVLDLRK
Length481
PositionTail
OrganismRhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Colobinae> Rhinopithecus.
Aromaticity0.08
Grand average of hydropathy-0.377
Instability index38.32
Isoelectric point5.57
Molecular weight52149.59
Publications
PubMed=25362486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18960
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     361.12|      40|      40|     289|     328|       1
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  126-  165 (38.73/21.51)	...PNKatVLRGHESE...........VFICAWNPVS.........dlL.ASGSGD.......STARIWNL.
  186-  221 (41.96/23.98)	.DHDVT..S....NKD...........VTSLDWNSDG.........tlL.ATGSYD.......GFARIWT.E
  222-  252 (39.67/22.23)	NGNLTS..TLGQHKGP...........IFALKWNKKG..........nY..................ILSAG
  253-  304 (47.53/28.24)	VDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCSTD.......MYIHVCRLG
  305-  346 (64.47/41.20)	CDRPVK..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCSDD.......MTLKIWSMK
  347-  401 (41.32/23.49)	QDACVH..NLQAHSKE...........IYTIKWSPTGpatsnpnssimL.ASASFDstvrlwdMEQGVC...
  402-  439 (45.42/26.63)	....TH..TLMKHQEP...........VYSVAFSPDG..........kYlASGSFD.......KCVHIWNTQ
  440-  477 (42.02/24.02)	SGSLVH..SYQG.TGG...........IFEVCWNAQG........dkvG.VSASDG..........SVCVL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.28|      31|      36|      45|      75|       4
---------------------------------------------------------------------------
   45-   75 (50.03/31.07)	IDAVIPDVVQMQQQAFGEKLT..QQQASAAAME
   82-  114 (47.25/28.97)	VAPITPATVSQQNPPKNQEATvnGEQNGARAIN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18960 with Med16 domain of Kingdom Metazoa
Unable to open file!