<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18959

Description Uncharacterized protein
SequenceGKWKILNIFLTLFYLMLEGVFRLGGNRLDGTVFDGRPTESLSLIDAVIPDVVQMQQQAFGEKLTQQQASAMQNPPKNQEATVNGEQNGARAINNHSKDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGDHDVTSNKDVTSLDWNSDGTLLATGSYDGFARIWTENGNLTSTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMYIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHNLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDMEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYQGTGGIFEVCWNAQGDKVGVSASDGSVCVLDLRK
Length460
PositionTail
OrganismRhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Colobinae> Rhinopithecus.
Aromaticity0.08
Grand average of hydropathy-0.354
Instability index33.13
Isoelectric point5.74
Molecular weight50422.90
Publications
PubMed=25362486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18959
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     361.44|      40|      40|     268|     307|       1
---------------------------------------------------------------------------
  111-  144 (37.62/17.80)	.......LRGHESE...........VFICAWNPVS.........dlL.ASGSGD.......STARIWNL.
  165-  200 (42.37/20.92)	.DHDVTS....NKD...........VTSLDWNSDG.........tlL.ATGSYD.......GFARIWT.E
  201-  231 (40.07/19.40)	NGNLTSTLGQHKGP...........IFALKWNKKG..........nY..................ILSAG
  232-  283 (47.89/24.55)	VDKTTIIWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCSTD.......MYIHVCRLG
  284-  325 (63.62/34.89)	CDRPVKTFQGHTNE...........VNAIKWDPSG.........mlL.ASCSDD.......MTLKIWSMK
  326-  380 (41.73/20.50)	QDACVHNLQAHSKE...........IYTIKWSPTGpatsnpnssimL.ASASFDstvrlwdMEQGVC...
  381-  418 (45.71/23.11)	....THTLMKHQEP...........VYSVAFSPDG..........kYlASGSFD.......KCVHIWNTQ
  419-  456 (42.43/20.96)	SGSLVHSYQG.TGG...........IFEVCWNAQG........dkvG.VSASDG..........SVCVL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.93|      15|      18|      65|      82|       2
---------------------------------------------------------------------------
   65-   79 (27.41/21.43)	QQQASAMQNPPKNQE
   86-  100 (26.52/11.93)	QNGARAINNHSKDGD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18959 with Med16 domain of Kingdom Metazoa
Unable to open file!