<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18956

Description Uncharacterized protein
SequenceGKWKILNIFLTLFYLMLEGVFRLGGNRLDGTVFDGRPTESLSLIDAVIPDVVQMQQQAFGEKLTQQQASAAAMEASAMAKVAPITPATVSQQNPPKNQEATVNGEQNGARAINNHSKDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGDHDVTSNKDVTSLDWNSDGTLLATGSYDGFARIWTENGNLTSTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMYIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHNLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDMEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYQGTGGIFEVCWNAQGDKVGVSASDGSVCVLDLRK
Length480
PositionTail
OrganismRhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Colobinae> Rhinopithecus.
Aromaticity0.08
Grand average of hydropathy-0.318
Instability index34.01
Isoelectric point5.74
Molecular weight52319.07
Publications
PubMed=25362486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18956
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     361.44|      40|      40|     288|     327|       1
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  131-  164 (37.62/18.54)	.......LRGHESE...........VFICAWNPVS.........dlL.ASGSGD.......STARIWNL.
  185-  220 (42.37/21.75)	.DHDVTS....NKD...........VTSLDWNSDG.........tlL.ATGSYD.......GFARIWT.E
  221-  251 (40.07/20.19)	NGNLTSTLGQHKGP...........IFALKWNKKG..........nY..................ILSAG
  252-  303 (47.89/25.49)	VDKTTIIWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCSTD.......MYIHVCRLG
  304-  345 (63.62/36.13)	CDRPVKTFQGHTNE...........VNAIKWDPSG.........mlL.ASCSDD.......MTLKIWSMK
  346-  400 (41.73/21.32)	QDACVHNLQAHSKE...........IYTIKWSPTGpatsnpnssimL.ASASFDstvrlwdMEQGVC...
  401-  438 (45.71/24.01)	....THTLMKHQEP...........VYSVAFSPDG..........kYlASGSFD.......KCVHIWNTQ
  439-  476 (42.43/21.79)	SGSLVHSYQG.TGG...........IFEVCWNAQG........dkvG.VSASDG..........SVCVL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.20|      35|      38|      52|      89|       2
---------------------------------------------------------------------------
   55-   89 (56.70/36.87)	QQQAFGEKLT..QQQASAAAMEASAMAKVAPITP..ATV
   92-  130 (51.51/25.84)	QNPPKNQEATvnGEQNGARAINNHSKDGDVEIPPnkATV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18956 with Med16 domain of Kingdom Metazoa
Unable to open file!