<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18955

Description Uncharacterized protein
SequenceDGWITRSGDRDHPGEHGETLSLLKKYKQLAGRGGGLFDGRPTESLSLIDAVIPDVVQMQQQAFGEKLTQQQASAAAMEASAMAKVAPITPATVSQQNPPKNQEATVNGEQNGARAINNHSKDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGDHDVTSNKDVTSLDWNSDGTLLATGSYDGFARIWTENGNLTSTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMYIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHNLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDMEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYQGTGGIFEVCWNAQGDKVGVSASDGSVCVLDLRK
Length484
PositionTail
OrganismRhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Colobinae> Rhinopithecus.
Aromaticity0.07
Grand average of hydropathy-0.430
Instability index33.19
Isoelectric point5.77
Molecular weight52539.97
Publications
PubMed=25362486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18955
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     361.12|      40|      40|     292|     331|       1
---------------------------------------------------------------------------
  129-  168 (38.73/18.31)	...PNKatVLRGHESE...........VFICAWNPVS.........dlL.ASGSGD.......STARIWNL.
  189-  224 (41.96/20.41)	.DHDVT..S....NKD...........VTSLDWNSDG.........tlL.ATGSYD.......GFARIWT.E
  225-  255 (39.67/18.92)	NGNLTS..TLGQHKGP...........IFALKWNKKG..........nY..................ILSAG
  256-  307 (47.53/24.02)	VDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCSTD.......MYIHVCRLG
  308-  349 (64.47/35.00)	CDRPVK..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCSDD.......MTLKIWSMK
  350-  404 (41.32/19.99)	QDACVH..NLQAHSKE...........IYTIKWSPTGpatsnpnssimL.ASASFDstvrlwdMEQGVC...
  405-  442 (45.42/22.65)	....TH..TLMKHQEP...........VYSVAFSPDG..........kYlASGSFD.......KCVHIWNTQ
  443-  480 (42.02/20.44)	SGSLVH..SYQG.TGG...........IFEVCWNAQG........dkvG.VSASDG..........SVCVL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.28|      31|      36|      48|      78|       2
---------------------------------------------------------------------------
   48-   78 (50.03/31.80)	IDAVIPDVVQMQQQAFGEKLT..QQQASAAAME
   85-  117 (47.25/29.67)	VAPITPATVSQQNPPKNQEATvnGEQNGARAIN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18955 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQQAFGEKLTQQQASAAAMEASAMAKVAPITPATVSQQNPPKNQEATVNGEQNGARAINNHSKDGDVEIPPNKA
59
132










Molecular Recognition Features






MoRF SequenceStartStop




1) DGWITRSG
2) GEHGETLSLLKKYKQ
1
14
8
28