<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18927

Description Uncharacterized protein
SequenceMQRNETRPLEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQSSPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEESKEEDDLGYDDDFPVAVEVIVGGVRMVYPSAFVLISQNDIPVPQSVASAGGHITVGQQGLGSVKDPSNCGMPLTPPTSPEQAILGESGGMQSAASHLVSQDGGMITMHSPKRSGKIPPKLHNHMVHRVWKECILNRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSCSCSRHKLLKRCAVGPNRPPTMSQPGFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDAPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLELQQLSTLDDRTVLVGQRLPLMAEVSETALYCGIRPLNPESSEKWWHSYRLPPSDDAEFRPPELQGERCDAKMEVNSESTALQRLLAQPNKRFKIWQDKQPQMQPLHFLDPLPLSQQPGDSLGEPTTPMKMGLAPTMMICLLTFHSQMIWTMILAY
Length592
PositionMiddle
OrganismRhinopithecus bieti (Black snub-nosed monkey) (Pygathrix bieti)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Colobinae> Rhinopithecus.
Aromaticity0.06
Grand average of hydropathy-0.534
Instability index74.57
Isoelectric point6.19
Molecular weight65492.87
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18927
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     318.48|      61|      93|     275|     335|       1
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  170-  224 (70.96/26.30)	........CGM...PL.....T.....................PPTSP.EQailGESGGM...QSAASHLVSQDGGMITMHSPKRSGKI..PP...............................................KLHNH
  225-  271 (51.13/17.15)	MVHRVWKECILnrTQS.....K.....................RSQMS.TP...TLEEEP...ASNPATWDFVDPTQRVS.................................................................
  275-  335 (104.81/41.91)	SRHKLLKRCAV..GPN.....R.....................PPTMS.QP...GFSAGP...SSSSSLPPPASSKHKTTERQEKGDKL..QK...............................................RPLIP
  370-  475 (28.28/ 6.62)	SSRKYDKQMAV...PS.....RntskqmnlnpmdsphspisplPPTLSpQP......RG....QETESLDPP.....................svpvnpalygnglelqqlstlddrtvlvgqrlplmaevsetalycgiRPLNP
  477-  537 (63.31/22.77)	SSEKWWHSYRL..PPSddaefR.....................PPELQ.GE...RCDAKMevnSESTAL.......QRLLAQPNKRFKIwqDK...............................................QP...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.14|      27|      93|      40|      67|       3
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   40-   67 (45.29/30.33)	LINEEHIHMAQS.SPAPFQVLVSPYGLnG
  135-  162 (43.84/24.63)	LISQNDIPVPQSvASAGGHITVGQQGL.G
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18927 with Med13 domain of Kingdom Metazoa
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