Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | TSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPIILHENNVSRSLGMNSSVTIEGTSAMYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQPIPVSRAFVQKLQSCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYGMTTGNNPMSGTTTPTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQNPILTSLLQITGNGGSTIGSSPTPPHHTPPPVSSMAGNTKNHPMLMNLLKDNPAQDFSTLYGSSPLERQNSSSGSPRMEICSGSNKTKKKKSSRLPPEKPKHQTEDDFQRELFSMDVDSQNPIFDVNMTADTLDTPHITPAPSQCSTPPTTYPQPVPHPQPSIQRMVRLSSSDSIGPDVTDILSDIAEEASKLPSTSDDGPAIGTPLRDSSSSGHSQSTLFDSDVFQTNNNENPYTDPADLIADAAGSPSSDSPTNHFFHDGVDFNPDLLNSQSQSGFGEEYFDESSQSGDNDDFKGFASQALNTLGVPMLGGDNGESKFKANNQADTVDFSIISVAGKALGPADLMEHHSGSQGPLLTTGDLGKEKTQKRVKEGNGTSNSTLAGPGLDSKPGKRSRTPSNDGKSKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSSGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSSASTSGKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPGGSDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPLDGQMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSSKKTSESKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGESSGEGLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYTPQNLDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSTEKHKKHKKEKKKVKDKDRDRDRDKDRDKKKSHSIKPESWSKSPISSDQSLSMTSNTILSADRPSRLSPDFMIGEEDDDLMDVALIGN |
Length | 1511 |
Position | Middle |
Organism | Rhinopithecus bieti (Black snub-nosed monkey) (Pygathrix bieti) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Colobinae> Rhinopithecus. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.685 |
Instability index | 54.29 |
Isoelectric point | 8.79 |
Molecular weight | 160391.74 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP18881 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 9| 462.25| 50| 50| 1012| 1061| 1 --------------------------------------------------------------------------- 912- 962 (53.32/13.33) LAG........PGLDSKPGK.R....SRTPSNDG.......KSKDKP..PKRK.K.......................A...DTEGK.SP.SHSSSnrpfTP 963- 1011 (43.48/ 9.25) PTS........TG.....GS.K.SPGSSGRSQTP.......PGVATPpiPKIT.I.......................Q...IPKGTvMV.GKPSS...hSQ 1012- 1061 (87.84/27.62) YTS........SGSVSSSGS.K.SHHSHSSSSSS.......SSASTS..GKMK.S.......................S...KSEGS.SS.SKLSS....SM 1062- 1112 (54.15/13.67) YSS........QGSSGSSQS.KnSSQSGGKPGSSpitkhglSSGSSS..TKM..............................KPQG......KPSS....LM 1115- 1155 (50.75/12.26) SLS........KPNISPS.......HSRPPGGSD.......KLAS.....PMK.P.......................V.....PGTpPS.SKAKS....PI 1156- 1190 (36.11/ 6.19) ................SSGSgG.SHMSGTSSS..............S..G.MK.S.......................S...SGLGS.SG.S.LSQ...kTP 1197- 1244 (56.90/14.81) TAS........SSSFSSSGS.S.MSSSQNQHGSS.......KGKSPS..RNKK.P.......................S...LT..A.VI.DKLKH....GV 1245- 1306 (42.77/ 8.95) VTSgpggedplDGQMGVSTN.S.SSHPMSSKHNM.......SGGEFQ..GKRE.K.......................SdkdKSKVS.TSgSSVDS....SK 1406- 1476 (36.94/ 6.54) YQN........SPS.SDDGI.R.PLPEYSTEKHK.......KHKKEK..KKVKdKdrdrdrdkdrdkkkshsikpeswS...KSPIS.SD.QSL......SM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 244.76| 50| 50| 253| 302| 2 --------------------------------------------------------------------------- 215- 251 (49.71/25.28) ....PSF.SSITSANSVDLPACFFL.KFPQPIPVSRA.................F...VQKL...Q.. 253- 302 (94.87/55.64) CTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNM...............RF...YAALPGQQHC 313- 353 (43.58/21.16) .......DGRSLQGTLVSKIT.F...QHPGRVPLILNL..............iRHqvaYNTLIGS..C 363- 418 (56.61/29.93) SPGLLQFEV....CPLSE..SRFSVSFQH...PVNDSLvcvvmdvqdsthvscKL...YKGLSDALIC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 89.48| 17| 20| 470| 487| 3 --------------------------------------------------------------------------- 470- 486 (35.50/11.80) PPASSPGYGMTTGNNPM 492- 507 (26.04/ 6.25) PTNTFPGGPITTLFN.M 558- 573 (27.94/ 6.99) PPPVSSMAG.NTKNHPM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 122.69| 39| 49| 1311| 1351| 4 --------------------------------------------------------------------------- 1311- 1351 (59.92/32.27) SKNVGSTGVAKiIISKHDGGSPSiKAKVTLQKP....GES.SGEGL 1358- 1401 (62.77/27.14) SKNYGSPLISG.STPKHERGSPS.HSKSPAYTPqnldSESeSGSSI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 232.76| 42| 117| 512| 553| 5 --------------------------------------------------------------------------- 512- 547 (53.82/22.93) ...................................KDRH......ESVGHGED..F.SK.......V.SQ.....NP.ILTSLLQITGNGGSTI 548- 607 (39.17/14.42) GSSPTP....phhtpppvssmagntknhpmlmnllKD.........N..PAQD..F.ST.......L.YG.....SS.PLER..QNSSSGSPRM 612- 665 (38.50/14.03) GSNKT...................kkkkssrlppeKPKH......QT...EDD..F.QRelfsmdvD.SQ.....NP.IFD..VNMTADTLDTP 666- 732 (29.56/ 8.82) HITPAPsqcstppttypqpvphpqpsiqrmvrlssSD.........SI..GPD..V.TD.......IlSD.....IA.EEASKLPSTSDDGPAI 733- 779 (26.04/ 6.78) G......................................tplrdsSSSGHSQStlFdSD.......V.FQtnnneNP.YTDPADLIADAAGSPS 780- 812 (45.66/18.19) SDSPT.................................N......HFFHDGVD..F...................NPdLLNSQSQ.SGFGEEYF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 122.74| 37| 49| 75| 112| 6 --------------------------------------------------------------------------- 75- 112 (60.44/47.80) NFDEFSKHLKGLVNlYNLP..GDNKLKTKMYLALQSLEQD 125- 163 (62.30/44.34) NAGPLDKILHGSVG.YLTPrsGGHLMNLKYYVSPSDLLDD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 45.93| 13| 51| 836| 848| 8 --------------------------------------------------------------------------- 836- 848 (24.99/11.13) GVPMLGGDNGESK 871- 883 (20.94/ 8.13) GPADLMEHHSGSQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 41.14| 13| 35| 820| 832| 10 --------------------------------------------------------------------------- 820- 832 (23.80/17.06) DNDDFK..GFASQAL 856- 870 (17.34/10.09) DTVDFSiiSVAGKAL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FGEEYFD 2) IKAKVTLQ 3) IRPLPEYSTEKHKKHKKEKKKVKDKDRD 4) ITIQIPK 5) KPSLTAVIDKLKHGV 6) RLSPDFMIGEEDDDLMDV 7) VAKIIISKH | 807 1334 1416 992 1230 1489 1319 | 813 1341 1443 998 1244 1506 1327 |
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