<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18848

Description Mediator complex subunit 13 like
SequenceMDKNFVRIGKWFVRPYEKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQSSPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEELKEEEELGYDDDFPVAVEVIVGGVRMVYPSAFVLISQNDIPVPQSVASAGGHITVGQQGLGSVKDPSNCGMPLTPPTSPEQAVIGESGGMQSATSHLGSQDGGMITMHSPKRSGKIPPKLHNHMVHRVWKECILNRTQSKRSQMSTPTLEEEPANNPATWDFVDPTQRVSCSCSRHKLLKRCAVGPSRPPTISQPGFSAGTSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDTPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLELQPLSTLDDRTVLVGQRLPLMAEVSETALYCGIRPSNPESSDKWWHSYRLPSSDDAEFRPPELQGERCDAKMEVNSESTALQRLLAQPNKRFKIWQDKQPHVQPVHFLDPLPLSQQPGDSLGEWLQPTIPMKMGLAPTMMICSLTFHSRMIWTMILAY
Length612
PositionMiddle
OrganismPropithecus coquereli (Coquerel's sifaka) (Propithecus verreauxi coquereli)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Strepsirrhini> Lemuriformes> Indriidae> Propithecus.
Aromaticity0.06
Grand average of hydropathy-0.543
Instability index71.62
Isoelectric point6.48
Molecular weight67927.58
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18848
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.01|      26|      28|     229|     256|       1
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  229-  256 (43.33/33.17)	KRSGKIPPKLHNHMVHR..VWKecILNRTQ
  258-  285 (42.69/25.31)	KRSQMSTPTLEEEPANNpaTWD..FVDPTQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.87|      50|      93|     292|     352|       2
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  292-  350 (71.23/40.27)	SRHKLLKRCAVgPSR.....................PPTIS.QPgfsAGtSSSSSLPPPASSKHKTTerqeKGDKLQKRPL
  387-  458 (73.64/22.96)	SSRKYDKQMAV.PSRntskqmnlnpmdsphspisplPPTLSpQP...RG.QETESLDPPSVPVNPAL....YGNGLELQPL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     245.89|      75|      93|       8|      84|       3
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    8-   84 (126.10/96.35)	IGKW..FVRPYEKDEKPVNKSEHLSCAFTFFLHGESnVCTSVEIAQHQPIYLINEEHIHMAQS.SPAPFQVLVSPYGLnG
  102-  179 (119.79/82.07)	IEEWqyFYPMVLKKKEELKEEEELGYDDDFPVAVEV.IVGGVRMVYPSAFVLISQNDIPVPQSvASAGGHITVGQQGL.G
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.93|      24|      48|     491|     515|       4
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  491-  515 (42.26/28.93)	NPESSDKWWHSyRLPSSDDAEFRPP
  541-  564 (46.67/27.04)	QPNKRFKIWQD.KQPHVQPVHFLDP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.62|      13|     211|     363|     375|       6
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  363-  375 (24.90/13.60)	LCMEQDTPGQKLG
  565-  576 (21.94/11.08)	LPLSQQ.PGDSLG
  577-  588 (22.78/11.79)	EWLQPTIP.MKMG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18848 with Med13 domain of Kingdom Metazoa
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