<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18838

Description Uncharacterized protein
SequenceMAAPLGGMFSGQPPGPPPPLPGLPGQASLLQATPGAQRPSNSTLVDKLESSFKACFASLVSQDYVNGTDQEEIRTVYPEISRYCKTECFFLQKRLQLSVQKPEQVIKEFDVSELRNELQRKDALVQKHLTKLRHWQQVLEDISVQHKKPADILQGSLAYLEQALATIPVPLKPT
Length174
PositionHead
OrganismPropithecus coquereli (Coquerel's sifaka) (Propithecus verreauxi coquereli)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Strepsirrhini> Lemuriformes> Indriidae> Propithecus.
Aromaticity0.06
Grand average of hydropathy-0.387
Instability index59.47
Isoelectric point7.71
Molecular weight19317.98
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18838
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.86|      10|      24|      91|     101|       1
---------------------------------------------------------------------------
   91-  101 (12.74/10.02)	LQKRLQLsVQK
  118-  127 (17.12/ 8.70)	LQRKDAL.VQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.51|      12|      23|     136|     147|       3
---------------------------------------------------------------------------
  136-  147 (20.37/12.86)	QQVLEDISVQHK
  161-  172 (20.14/12.65)	EQALATIPVPLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18838 with Med28 domain of Kingdom Metazoa
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