<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18775

Description Mediator complex subunit 25
SequenceMVPGSEGPARAGGLVADVVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFDDFKKMREQIGQTHRVCLLICNSPPYLLPAVESTTYSGYTTESLVQKIGERGIHFSIVSPRKLPALRLLFEKAAPPALLEPLQPPADVSQDPRHMVLVRGLVLPVGGGSASGPLQPKQPVPLPPTAPSGATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGAPFSQPPGAPALLPPPHQGLGQPQLGPPLLHPPPAQSWPAQLPSRAPLPGQMLLSGGPRGPVPQPGLQPSVMEDDILMDLI
Length398
PositionUnknown
OrganismPropithecus coquereli (Coquerel's sifaka) (Propithecus verreauxi coquereli)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Strepsirrhini> Lemuriformes> Indriidae> Propithecus.
Aromaticity0.07
Grand average of hydropathy-0.068
Instability index61.23
Isoelectric point5.51
Molecular weight41612.26
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18775
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     336.32|      81|     111|     185|     273|       1
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  121-  172 (56.64/12.75)	.....ALQLFddFKK.....MRE......Q..IGQTHRVCLLI...........CNSP......PY.LLPaveSTTYS.GYTTESLVQK............
  185-  273 (126.04/53.45)	PRKLPALRLL..FEKaAPPALLEPlQPPAD..VSQDPRHMVLVRGlVLPvGGGSASGPlQPK.QPV.PLP...PTAPS.GATLSAAPQQP..LPPvPpqYQ
  275-  335 (80.48/21.59)	PGNLSA..........AQVAA....QNAVE..AAKNQK...A........GLG.......PRfSPItPLQ...QAAPGvGAPFSQPPGAPalLPP.P..HQ
  340-  387 (73.16/18.58)	PQ..............LGPPLLHP..PPAQswPAQLPS.....RA.PLP.GQMLLSG..GPR.GPV.PQP...GLQPS.......................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18775 with Med25 domain of Kingdom Metazoa
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