Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNIKYYASPSDLLDDKTTSPIILHENNVPRSLGMNASVTIEGTSAMYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYVPLYELITQFELSRDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPLPDGRSLQGILVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTILKEDSPGLLQFEVCPLSESRFSISFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYGMTTGNNPMSGTTTPTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQNPILTSLLQITGNGGSTIGSSPTPPHHTPPPVSSMAGNTKNHPMLMNLLKDNPAQDFSTLYGSSPLERQNSSSGSPRMEMCSGSNKTKKKKSSRLPPDKPKHQTEDDFQRELFSMDVDSQNPIFDVNMTADTLDTPHITPAPSQCSTPPTTYTQPVPHSQPSIQRMVRLSSSDSIGPDVTDILSDIAEEASKLPSTSDDCPPIGTPVRDSSSSGHSQSTLFDSDVFQTNNNENPYTDPADLIADAAGSPSSDSPTNHFFPDGVDFNPDLLNSQSQSGFGEEYFDESSQSGDNDDFKGFASQALNTLGVPMLGGDNGETKFKGNSQADTVDFSIISVASKALGPADLMEHHSGSQSPLLATGDLGKEKTQKRVKEGNGTSNSTLSGPGLDSKPGKRSRTPSNDGKSKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSSGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSSSKSHHSHSSSSSSSSSASTSSKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPGGCDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCTASASSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPMDGQMSASTNSSSHAMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSADSSKKASESKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGESSGEGLRAQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYTPQNLDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSTEKHKKHKKEKKKVKDKDRDRDRDKDRDKKKSHSIKPENWSKSPISSDQSLSITSNTILSADRPSRLSPDFMIGEEDDDLMDVALIGN |
Length | 1583 |
Position | Middle |
Organism | Propithecus coquereli (Coquerel's sifaka) (Propithecus verreauxi coquereli) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Strepsirrhini> Lemuriformes> Indriidae> Propithecus. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.675 |
Instability index | 54.87 |
Isoelectric point | 8.87 |
Molecular weight | 168730.41 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:Ensembl nucleolus GO:0005730 IEA:Ensembl nucleoplasm GO:0005654 IEA:Ensembl |
GO - Biological Function | DNA binding GO:0003677 IEA:Ensembl estrogen receptor binding GO:0030331 IEA:Ensembl LBD domain binding GO:0050693 IEA:Ensembl nuclear receptor coactivator activity GO:0030374 IEA:Ensembl peroxisome proliferator activated receptor binding GO:0042975 IEA:Ensembl promoter-specific chromatin binding GO:1990841 IEA:Ensembl protein-containing complex binding GO:0044877 IEA:Ensembl retinoic acid receptor binding GO:0042974 IEA:Ensembl thyroid hormone receptor binding GO:0046966 IEA:Ensembl transcription corepressor activity GO:0003714 IEA:Ensembl vitamin D receptor binding GO:0042809 IEA:Ensembl |
GO - Biological Process | androgen biosynthetic process GO:0006702 IEA:Ensembl angiogenesis GO:0001525 IEA:Ensembl animal organ regeneration GO:0031100 IEA:Ensembl brain development GO:0007420 IEA:Ensembl cell morphogenesis GO:0000902 IEA:Ensembl cellular response to epidermal growth factor stimulus GO:0071364 IEA:Ensembl cellular response to hepatocyte growth factor stimulus GO:0035729 IEA:Ensembl cellular response to thyroid hormone stimulus GO:0097067 IEA:Ensembl embryonic heart tube development GO:0035050 IEA:Ensembl embryonic hemopoiesis GO:0035162 IEA:Ensembl embryonic hindlimb morphogenesis GO:0035116 IEA:Ensembl embryonic placenta development GO:0001892 IEA:Ensembl enucleate erythrocyte development GO:0048822 IEA:Ensembl epithelial cell proliferation involved in mammary gland duct elongation GO:0060750 IEA:Ensembl fat cell differentiation GO:0045444 IEA:Ensembl intracellular steroid hormone receptor signaling pathway GO:0030518 IEA:Ensembl keratinocyte differentiation GO:0030216 IEA:Ensembl lactation GO:0007595 IEA:Ensembl lens development in camera-type eye GO:0002088 IEA:Ensembl liver development GO:0001889 IEA:Ensembl mammary gland branching involved in pregnancy GO:0060745 IEA:Ensembl mammary gland branching involved in thelarche GO:0060744 IEA:Ensembl megakaryocyte development GO:0035855 IEA:Ensembl monocyte differentiation GO:0030224 IEA:Ensembl mRNA transcription by RNA polymerase II GO:0042789 IEA:Ensembl negative regulation of apoptotic process GO:0043066 IEA:Ensembl negative regulation of keratinocyte proliferation GO:0010839 IEA:Ensembl negative regulation of neuron differentiation GO:0045665 IEA:Ensembl negative regulation of transcription by RNA polymerase II GO:0000122 IEA:Ensembl peroxisome proliferator activated receptor signaling pathway GO:0035357 IEA:Ensembl positive regulation of erythrocyte differentiation GO:0045648 IEA:Ensembl positive regulation of G0 to G1 transition GO:0070318 IEA:Ensembl positive regulation of gene expression GO:0010628 IEA:Ensembl positive regulation of hepatocyte proliferation GO:2000347 IEA:Ensembl positive regulation of interferon-gamma-mediated signaling pathway GO:0060335 IEA:Ensembl positive regulation of intracellular estrogen receptor signaling pathway GO:0033148 IEA:Ensembl positive regulation of keratinocyte differentiation GO:0045618 IEA:Ensembl positive regulation of transcription initiation from RNA polymerase II promoter GO:0060261 IEA:Ensembl protein import into nucleus GO:0006606 IEA:Ensembl regulation of vitamin D receptor signaling pathway GO:0070562 IEA:Ensembl retinal pigment epithelium development GO:0003406 IEA:Ensembl thyroid hormone generation GO:0006590 IEA:Ensembl thyroid hormone mediated signaling pathway GO:0002154 IEA:Ensembl ventricular trabecula myocardium morphogenesis GO:0003222 IEA:Ensembl |
Binary Interactions |
Repeats | >MDP18766 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 9| 442.25| 49| 50| 979| 1027| 1 --------------------------------------------------------------------------- 670- 714 (43.02/11.51) .....NSSSGS..PR....MEMC.SG.S.NKTKKK..K..SSRLP......P....D.....KPKHQTEDDFQRELFS 770- 818 (37.49/ 8.73) S....SSDSIG..PDvtdiLSDI.AE.EASKLPST.....SDDCP......PigtpV.....R.....DSSSSGHSQS 979- 1027 (88.66/34.47) S....NSTLSG..PG....LDSK.PG.KRSRTPSNDGK..SKDKP......P....K.....RKKADTEGKSPSHSSS 1034- 1083 (43.54/11.77) P....TST......G.....GSKsPG.SSGRSQTPPGV..ATPPI......P....KitiqiPKGTVMVGKPSSHSQY 1088- 1131 (53.26/16.66) S....VSSSSS..KS....HHSH.SS.SSSSSSSASTS..SKMKS......S....K..........SEGSSSSKLSS 1142- 1182 (35.48/ 7.72) SsqskNSSQSGgkPG......SS.PI.TKHGLSSGSSS..TKMKP.....................Q..GK.PS.S.. 1185- 1231 (51.09/15.57) .....NPSLSK..PN....IS...P..SHSRPPGGCDKlaSPMKP......V....P.....GTPPSSKAKSPISSGS 1232- 1278 (50.27/15.16) G....GSHMSG..TS......SS.SGmKSSSGLGSSGS..LSQKT......P....P.....SSNSCTASAS.SFSSS 1411- 1455 (39.45/ 9.72) .......TLQK..PG....ESSG.EG.LRAQMAS..SK..NYGSPlisgstP....K.....HER....G.SPSHSKS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 80.74| 35| 50| 1282| 1324| 2 --------------------------------------------------------------------------- 1301- 1355 (42.33/35.43) KKPsltaviDKLKHGVVTSGPGGEdpmdgqMSASTNssshamssKHNMSG.......GEFQG 1358- 1405 (38.41/14.92) EKS......DKDKSKVSTSGSSAD..sskkASESKN......vgSTGVAKiiiskhdGGSPS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 229.85| 50| 50| 150| 199| 3 --------------------------------------------------------------------------- 146- 182 (50.59/31.11) .............NFDE......FSKHL..KGLV.NLYNL..........P..GDNKLKTK.MYLALQSLEQ 183- 233 (74.98/50.35) DLSKMAIMYWKATNAGP......LDKIL..HGSV.G.YLT..........PrsGGHLMNIK.YYASPSDLLD 234- 296 (56.16/35.51) DKTTSPIILHE..NNVPrslgmnASVTI..EGTS.AMYKLpiaplimgshP..VDNKW.TP.SFSSITSANS 298- 342 (48.12/29.17) DLP..ACFFLKFPQPIP...........vsRAFVqKLQNC..........T..GIPLFETQpTYVPLYEL.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 101.04| 33| 51| 343| 381| 4 --------------------------------------------------------------------------- 343- 381 (52.86/50.71) ITqFElsrDPDPIPLNHNM.RF...YAALPGQqhCY...FLNKDAP 396- 435 (48.18/28.00) IT.FQ...HPGRVPLILNLiRHqvaYNTLIGS..CVkrtILKEDSP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 97.12| 21| 42| 602| 622| 5 --------------------------------------------------------------------------- 602- 622 (33.10/13.63) PILTSLLQITGNGGSTI.GSSP 624- 643 (36.59/15.93) PPHHTPPPVSSMAGNT..KNHP 644- 665 (27.42/ 9.88) MLMNLLKDNPAQDFSTLyGSSP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 179.35| 42| 100| 838| 879| 6 --------------------------------------------------------------------------- 838- 879 (79.55/49.62) PADLIADAAGSP..SSDSPTNHF....FPDGVDFNPDLLNSQSQ....SGFG 884- 905 (23.12/ 7.76) ......D....E..SSQSGDNDD....F.KG..FASQALNT........... 907- 942 (28.17/11.50) .........GVPmlGGDNGETKFkgnsQADTVDFS...IISVAS....KALG 943- 977 (48.51/26.59) PADLMEHHSG.....SQSP...L....LATG.....DLGKEKTQkrvkEGNG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 65.03| 17| 20| 541| 558| 7 --------------------------------------------------------------------------- 541- 558 (30.58/17.54) PPASSPGYGMTTGNNpMS 563- 579 (34.45/15.45) PTNTFPGGPITTLFN.MS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 92.78| 27| 70| 1460| 1494| 10 --------------------------------------------------------------------------- 1460- 1486 (45.33/33.83) PQNLDSESESGSSIAEKSYQNSPSSDD 1517- 1543 (47.45/18.79) DRDKDRDKKKSHSIKPENWSKSPISSD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FGEEYFDE 2) IKAKVTLQK 3) IRPLPEYSTEKHKKHKKEKKKVKDKDR 4) KITIQIPK 5) KPSLTAVIDKLKHGV 6) RLSPDFMIGEEDDDLMD 7) VAKIIISKH | 878 1406 1488 1062 1302 1561 1391 | 885 1414 1514 1069 1316 1577 1399 |
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