<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18758

Description Uncharacterized protein
SequenceHSGSKRGPCCPTSRRTCDALPASMAASQQQASAASSAAGVSGPGSAGGPGPQQQPQPPAQLVGPAQSGLLQQQQQDFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYALCDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAKDIHTALLDCANKVTGKTPAPPTGPGGAL
Length223
PositionTail
OrganismPropithecus coquereli (Coquerel's sifaka) (Propithecus verreauxi coquereli)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Strepsirrhini> Lemuriformes> Indriidae> Propithecus.
Aromaticity0.03
Grand average of hydropathy-0.401
Instability index68.20
Isoelectric point7.65
Molecular weight23396.28
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
nucleoplasm	GO:0005654	IEA:Ensembl

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18758
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.79|      32|      39|      51|      83|       1
---------------------------------------------------------------------------
   51-   83 (56.01/35.68)	PQQQpQPPAQLVGPAQSGLLQQQ.....QQDFD.PVQRY
   88-  125 (41.78/21.18)	PQLK.ESLQTLMKVAAQNLIQNTnidngQKSSDgPIQRF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.94|      26|     151|       5|      31|       2
---------------------------------------------------------------------------
    5-   31 (44.03/21.38)	KRGPC.CPTSRRTcDAL.PASMAASQQQA
  158-  185 (37.91/14.10)	KHSPTlVPTATKP.DAVqPDSLPYPQYLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.47|      14|     167|      37|      50|       3
---------------------------------------------------------------------------
   37-   50 (27.48/11.86)	AAGVSG..PGSAGGPG
  205-  220 (23.99/ 9.58)	ANKVTGktPAPPTGPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18758 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HSGSKRGPCCPTSRRTCDALPASMAASQQQASAASSAAGVSGPGSAGGPGPQQQPQPPAQLVGPAQSGLLQQQQQ
1
75










Molecular Recognition Features






MoRF SequenceStartStop




1) HSGSKR
1
6