<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18654

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGSVDSRSIHILDTLLHMGGVYWFCNNLIKELLKETRKERALRAVELLYSILCLDMQQGTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQVSTRQKKRHREDIEDCISLFPLDDVQPSKLMRLLSSNEDDANILSSPNRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTLSTTFLVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length421
PositionTail
OrganismMacaca nemestrina (Pig-tailed macaque)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Cercopithecinae> Macaca.
Aromaticity0.08
Grand average of hydropathy0.078
Instability index49.78
Isoelectric point8.29
Molecular weight47041.39
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18654
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.83|      21|      70|     152|     172|       1
---------------------------------------------------------------------------
  152-  172 (41.51/26.03)	DSRSIH.ILD...TLLHM....GGVYWFC
  188-  211 (16.72/ 6.33)	ALRAVE.LLY...SILCLdmqqGTLVLL.
  221-  243 (24.59/12.58)	DSSKWHsLMDppgTALAK....LAV.W.C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.97|      40|      72|     301|     343|       2
---------------------------------------------------------------------------
  301-  343 (58.56/54.76)	PNRSMSSSLSASQLHTVN.MRDPlNRVLAnlFLLISSILGSRTA
  374-  414 (61.41/45.01)	PFTTLSTTFLVSELVKVSaMSSP.KVVLA..ITDLSLPLGRQVA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18654 with Med24 domain of Kingdom Metazoa
Unable to open file!