<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18653

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAAARLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASLHTSQGLGQGGTRANQPTASWTAIEHSLLKLGEILANLSNSQLRSQAEQCGTLIRSIPMMLSVHAEQMNKTGFPTVHAVILLEGTMNLTGQTQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTNFLLQECGKQGLLSEASVNSLMAKRKADREHAPQQKSGENVNIQPNIQLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSEKSLDLLLAAAAATEKLKSFARKFINLNEFTTYGSEESTKPASVWALLFDISFLTLCHVAQTYGSEVILSESRTGADTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFEKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYNERVVIMNSILERLCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGSVDSRSIHILDTLLHMGGVYWFCNNLIKELLKETRKERALRAVELLYSILCLDMQQGTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQVSTRQKKRHREDIEDCISLFPLDDVQPSKLMRLLSSNEDDANILSSPNRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTLSTTFLVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length998
PositionTail
OrganismMacaca nemestrina (Pig-tailed macaque)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Cercopithecinae> Macaca.
Aromaticity0.06
Grand average of hydropathy0.014
Instability index46.62
Isoelectric point6.68
Molecular weight110758.54
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18653
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.70|      17|      28|     480|     496|       1
---------------------------------------------------------------------------
  480-  496 (31.67/18.86)	FARKFINLNEFT.TYGSE
  509-  526 (28.03/15.98)	FDISFLTLCHVAqTYGSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.68|      17|     157|     534|     552|       2
---------------------------------------------------------------------------
  534-  552 (25.91/25.40)	TGADTcMPeEGKILNPDHP
  694-  710 (36.78/23.14)	TGVDT.MP.YWNLLPPKRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     237.90|      74|     492|      93|     173|       3
---------------------------------------------------------------------------
   96-  173 (117.55/76.66)	ALLDIMDMFCDRLSCHGKAEECI..GLCRALLSALHWLLrctAAARLREGLEAGTPAAGEKQLAMCLQRlEKTLSSTKNR
  591-  666 (120.35/60.96)	AILEILNAWENGVLAFEKITDNIkgKVCSLAVCAVAWLV...AHVRMLGLDEREKSLQMIRQLAGPLFS.ENTLQFYNER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.06|      19|      28|     317|     336|       4
---------------------------------------------------------------------------
  317-  336 (28.08/22.95)	TEELKwTAFTF.LKIPQVLVK
  347-  366 (29.98/17.74)	TEDVN.CAFEFlLKLTPLLDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.87|      26|     332|     452|     477|       9
---------------------------------------------------------------------------
  452-  477 (42.03/25.36)	LGVLGHML......SEKSLDLLLAAAAATEKL
  785-  816 (40.85/24.43)	LVLLGHILpglltdSSKWHSLMDPPGTALAKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18653 with Med24 domain of Kingdom Metazoa
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