<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18610
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | GGAGASMPSLSAPPSKNLHSFKLTHELCFRKMFQKFLFIWMSFLLFCFFLFSFFFSVVEEGLWENGLSYECRTLLFKAIHNLLERCLMDKNFVRIGKWFVRPYEKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQSSPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEESKEEDELGYDDDFPVAVEVIVGGVRMVYPSAFVLISQNDIPVPQSVASAGGHITVGQQGLGSVKDPSNCGMPLTPPTSPEQAILGESGGMQSAASHLVSQDGGMITMHSPKRSGKIPPKLHNHMVHRVWKECILNRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSCSCSRHKLLKRCAVGPNRPPTMSQPGFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDAPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLELQQLSTLDDRTVLVGQRLPLMAEVSETALYCGIRPSNPESSEKWWHSYRLPPSDDAEFRPPELQGERCDAKMEVNSESTALQRLLAQPNKRFKIWQDKQPQMQPLHFLDPLPLSQQPGDSLGEVNDPYTFEDGDIKYIFTANKKCKQGTEKDSLKKNKSEDGFGTKDVTTPGHSTPVPDGKNAMSIFSSATKTDVRQDNAAGRAGSSSLTQVTDLAPSLHDLDNIFDNSDDDELGAVSPALRPSKIPTVGTEDRPLGKDGRAAVPYPPTVADLQRMFPTPPSLEQHPAFSPVMNYKDGISSETVTALGMMESPMVSMVSTQLTEFKMEVEDGLGSPKPEEIKDFSYVHKVPSFQPFMGSSMFAPLKMLPSHCLLPLKIPDACLFRPSWAIPPKIEQLPMPPAATFIRDGYNNVPSVGSLADPDYLNTPQMNTPVTLNSAAPASNSGAGVLPSPATPRFSVPTPRTPRTPRTPRGGGTASGQGSVKYDSTDQGSPASTPSTTRPLNSVEPATMQPIPEAHSLYVTLILSDSVMNIFKDRNFDSCCICACNMNIKGADVGLYIPDSSNEDQYRCTCGFSAIMNRKLGYNSGLFLEDELDIFGKNSDIGQAAERRLMMCQSTFLPQVEGTRKPQEPPISLLLLLQNQHTQPFASLSFLDYISSNNRQTLPCVSWSYDRVQADNNDYWTECFNALEQGRQYVDNPTGGKVDEALVRSATVHSWPHSNVLDISMLSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGTYGSEESPEPLPIPTLLVGYDKDFLTISPFSLPFWERLLLDPYGGHRDVAYIVVCPENEALLEGAKTFFRDLSAVYEMCRLGQHKPICKVLRDGIMRVGKTVAQKLTDELVSEWFNQPWSGEENDNHSRLKLYAQVCRHHLAPYLATLQLDSSLLIPPKYQTPPAAAQGQATPGNAGPLAPNGSAAPPAGSAFNPTSNSSTTNPAASSSASGSSVPPVSSSASAPGISQISTTSSSGFSGSVGGQNPSTGGISTDRTQGSIGCGGDTDPGQSSSQPSQDGQESVTERERIGIPTEPDSADSHAHPPAVVIYMVDPFTYAAEEDSTSGNFWLLSLMRCYTEMLDNLPEHMRNSFILQIVPCQYMLQTMKDEQVFYIQYLKSMAFSVYCQCRRPLPTQIHIKSLTGFGPAASIEMTLKNPERPSPIQLYSPPFILAPIKDKQTELGETFGEASQKYNVLFVGYCLSHDQRWLLASCTDLHGELLETCVVNIALPSRSRRSKVSARKIGLQKLWEWCIGIVQMTSLPWRVVIGRLGRLGHGELKDWSILLGECSLQTISKKLKDVCRMCGISAADSPSILSACLVAMEPQGSFVVMPDAVTMGSVFGRSTALNMQSSQLNTPQDASCTHILVFPTSSTIQVAPANYPNEDGFSPNNDDMFVDLPFPDDMDNDIGILMTGNLHSSPNSSPVPSPGSPSGIGVGSHFQHSRSQGERLLSREAPEELKQQPLALGYFVSTAKAENLPQWFWSSCPQAQNQCPLFLKASLHHHISVAQTDELLPARNSQRVPHPLDSKTTSDVLRFVLEQYNALSWLTCNPATQDRTSCLPVHFVVLTQLYNAIMNIL |
Length | 2163 |
Position | Middle |
Organism | Mandrillus leucophaeus (Drill) (Papio leucophaeus) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini>
Cercopithecidae> Cercopithecinae> Mandrillus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.376 |
Instability index | 58.54 |
Isoelectric point | 5.81 |
Molecular weight | 237614.60 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | integral component of membrane GO:0016021 IEA:UniProtKB-KW
mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP18610
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 503.66| 107| 112| 773| 879| 1
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479- 565 (111.40/49.42) ...............DKQMAV.PSRN.TSKQMNLNPMD.SP.........HSPISPLP.PTLSPQPRGQETesldPPS.....VPVNPAL.....Y.GN..GLEL.QQLSTLD....DRTVL......VGQRLPLMAEV
567- 686 (126.01/56.98) ETALYCGIRPSNPesSEKWWHSYRLP.PSD....DAEF.RPpelQGErcDAKMEVNSE.STA..LQRLLAQ....PNKrfkiwQDKQPQMQP.LHF.LDplPLSQ.QPGDSLG...EVNDPYtfedgdIKYIFTANKKC
773- 866 (144.80/66.71) ...............DELGAVSPALR.PSKIPTVGTED.RP...LGK..DGRAAVPYP.PTVADLQRMFPT....PPS.....LEQHPAFSPVMNY.KD..GISS.ETVTALG...MMESPM......VSMVSTQLTEF
867- 972 (121.44/54.61) KMEVEDGLGSPKP..EEIKDFSYVHKvPSFQPFMGSSMfAP...LKM.lPSHCLLPLKiPDACLFRPSWAI....PPK.....IEQLP.MPPAATFiRD..GYNNvPSVGSLAdpdYLNTPQ......MN.........
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 417.73| 153| 1266| 109| 370| 2
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174- 370 (220.67/205.91) TGQAYKMSDPATRKLieEWQYFYPMVLKKKEESKEEDElgyddDFPVAVeVIVGgvrmvYPSAFVLISQNDIPVPQS..VASAGGH.................................................................................................................................................................itvgqqglgsvkdpsncgmpltppTSPEQAILGESGGmQSAASHLVSQDGgmiTMHSPKRSGKIPPKLHNHMVHRVWKECIlnrTQSKRSQMST.PTLEEEPASNPATWDF.VDP
1296- 1368 (93.94/15.98) TGRTWENIQHVQGPL..TWQQFHKMAGRGTYGSEESPE.....PLPIPT.LLVG.....YDKDFLTISPFSLPFWERllLDPYGGH....................................................................................................................................................................................................................................................................................
1554- 1637 (103.11/20.85) ......................................................................................rdvayivvcpeneallegaktffrdlsavyemcrlgqhkpickvlrdgimrvgktvaqkltdelvsewfnqpwsgeendnhsrlklyaqvcrhhlapylatlqldssllippkyqtppaaaqgqatpgnagplapngsaappagsafnptsnssttnpaasssasgssvppvsssasapgisqisTTSSSGFSGSVGG.QNPSTGGISTDR...TQGSIGCGGDTDPGQSSSQPSQDGQESV...TERERIGIPTePDSADSHAHPPAVVIYmVDP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 111.27| 32| 1266| 109| 142| 3
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109- 142 (52.23/37.52) PVNKSeHLSCAFTFFlHGESNVCTSVEIAQHQPI
1378- 1409 (59.04/33.95) PENEA.LLEGAKTFF.RDLSAVYEMCRLGQHKPI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 81.93| 26| 28| 2021| 2048| 4
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2021- 2048 (37.05/24.72) GsHFQhSRSQGERL...LSREAPEELKQQPL
2051- 2079 (44.88/21.52) G.YFV.STAKAENLpqwFWSSCPQAQNQCPL
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 254.74| 66| 480| 994| 1061| 5
---------------------------------------------------------------------------
391- 429 (54.95/18.16) .........................PNRPPTMSQPGFSAGPSSSSS...LPPPAS.S...KHKT.TERQEKG
973- 1009 (26.87/ 9.42) ............................TPVT...LNSAAPASNSGagvLP....sPAtpRFSVPTPRTPRT
1010- 1061 (83.23/31.05) PRTPRGGGTASGQGSVKYDSTDQGSPASTPSTTRPLNSVEPATMQP...IPEAHS.................
1492- 1547 (89.69/34.45) QATPGNAGPLAPNGSAAPPAGSAFNPTSNSSTTNPAAS.SSASGSS...VPPVSS.SA....SAP.......
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 85.19| 26| 28| 1811| 1837| 6
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1811- 1837 (42.59/39.74) IALPSRSRRSkVSAR..KIGLQKLWEWCI
1840- 1867 (42.60/33.63) VQMTSLPWRV.VIGRlgRLGHGELKDWSI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.04| 23| 26| 1693| 1718| 7
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1696- 1718 (44.77/33.93) YIQYLKSM..AFSVYCQCR...RPLPTQ
1720- 1747 (30.27/12.65) HIKSLTGFgpAASIEMTLKnpeRPSPIQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.86| 19| 24| 1650| 1669| 8
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1650- 1669 (31.05/21.56) NFWLLSLMRCyTEMLDNLPE
1673- 1691 (34.81/19.13) NSFILQIVPC.QYMLQTMKD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 39.28| 11| 24| 1983| 1994| 10
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1983- 1994 (17.73/12.87) PFPDDmDNDIGI
2010- 2020 (21.55/10.30) PSPGS.PSGIGV
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|