<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18547

Description Mediator complex subunit 13 like
SequenceMDKNFVRIGKWFVRPYEKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQSSPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEELKEEDELGYDDDFPVAVEVIVGGVRMVYPSAFVLISQNDIPVPQSVASAGGHITVGQQGLGSVKDPSNCGMPLTPPTSPEQAVLGESGGMQSAASHLGSQDGGMITMHSPKRSGKIPPKLHNHMVHRVWKECILNRTQYKRSQMSTPTLEEEPASNPATWDFVDPTQRVSCSCSRHKLLKRCAVGPNRPPTISQPGFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDTTGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPNSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLELQQLSTLDDRTVLVGQRLPLMAEVSETALYCGIRPSNPESSDKWWHSYRLPPCEDAEFRPPELQGERCDAKMEVNSESTALQRLLAQPNKRFKIWQDKQPQMQPLHFLDPLPLSQQPGDSLGEPTTPMKMGLAPTMMICLLTFHSQMIWTMILAY
Length609
PositionMiddle
OrganismCebus capucinus imitator
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Platyrrhini> Cebidae> Cebinae> Cebus.
Aromaticity0.06
Grand average of hydropathy-0.547
Instability index69.63
Isoelectric point6.33
Molecular weight67603.28
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18547
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     424.20|      93|      93|     294|     386|       1
---------------------------------------------------------------------------
  147-  218 (59.66/21.02)	...............................PSafvliSQ.NDIPVPQSvasaGGHITVG.QQGLGsvkDPSNcGMPL.....TP....PT......SPEQ.AVLGESGGMQSAASHL..GSQ
  294-  386 (160.37/67.99)	HKL.LKRCAVGPNRPPTISQPGFSA..G...PS.....SS.SSLPPPAS....SKHKTTE.RQEKG...DKLQ.KRPL.....IPFHHRPSV.AEELCMEQ.DTTGQKLGLAGIDSSL..EVS
  389-  479 (109.22/44.14)	RKY.DKQMAV.PSR.NTSKQMNLNPmdS...PN.....SPiSPLPPTLS....PQPRGQE..TESL...DP.....PS.....VPVN..PALyGNGLELQQlSTLDDRTVLVGQRLPLmaEVS
  500-  587 (94.95/37.48)	HSYrLPPCEDAEFRPPELQGERCDA..KmevNS.....ES.TALQRLLA....QPNKRFKiWQDKQ...PQMQ...PLhfldpLPLSQQPGD.S....LGE.PTTPMKMGLA...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.72|      26|      28|     229|     256|       2
---------------------------------------------------------------------------
  229-  256 (43.36/33.17)	KRSGKIPPKLHNHMVHR..VWKecILNRTQ
  258-  285 (42.36/25.09)	KRSQMSTPTLEEEPASNpaTWD..FVDPTQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18547 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CAVGPNRPPTISQPGFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDTTGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPNSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLEL
2) ITVGQQGLGSVKDPSNCGMPLTPPTSPEQAVLGESGGMQSAASHLGSQDGGMITMHSPKRSGKIPPKLH
300
171
455
239










Molecular Recognition Features






MoRF SequenceStartStop




NANANA