<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18503

Description Uncharacterized protein
SequenceMVPGSEGPARAGGLVADVVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFDDFKKMREQIGQTHRVCLLICNSPPYLLPAVESTTYSGCTTENLVQQIGERGIHFSIVSPRKLPALRLLFEKAAPPALLEPLQPPTDVSQDPRHMVLVRGLVLPVGGGSAPGPLQPKQPVPLPPAAPSGATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPPLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIMGNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQVQQQKLEQQQRGLQLRPPQPQPQGTVGASGATGQPQPQSTAQPPPVAPQGPPGTASGPPPPGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGAPALLPPPHQGLGQPQLGPPLLHPPPAQSWPTQLPPRAPLPAAKRKKEGEGRVFREKWERAYFFVEVKSMPMCLICKQNVTVLKEYNLKRHYESKHSKSYDQYTEQTRDAILNELKKGLKCQ
Length772
PositionUnknown
OrganismCebus capucinus imitator
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Platyrrhini> Cebidae> Cebinae> Cebus.
Aromaticity0.06
Grand average of hydropathy-0.328
Instability index57.93
Isoelectric point9.25
Molecular weight82209.55
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18503
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.06|      29|      60|     254|     282|       4
---------------------------------------------------------------------------
  240-  268 (39.37/ 7.35)	QPKQPVP..LPPAA................................psGATLSAAP.....................QQPLPPV
  269-  331 (36.80/ 6.31)	PPQYQVPGNLSAAQvaaqnaveaaknqkaglgprfspitplqqaapgvGPPFSQAP.....................APPLPPG
  631-  680 (36.89/ 6.35)	PPQTGVPPPQASLH..................................HLQPPGAPallppphqglgqpqlgppllhPPPAQSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.54|      22|      38|     554|     590|       5
---------------------------------------------------------------------------
  567-  590 (36.74/10.46)	QPQGTVGAsgATGQPQPQSTAQP..P
  593-  616 (41.80/12.13)	APQGPPGT..ASGPPPPGPILRPqnP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.19|      12|      66|     553|     564|       8
---------------------------------------------------------------------------
  553-  564 (23.31/12.52)	EQQQRGLQLRPP
  619-  630 (22.88/12.13)	NPQLRSLLLNPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.58|      37|      66|      92|     130|       9
---------------------------------------------------------------------------
   92-  130 (60.52/50.93)	YEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFddFKK
  161-  197 (64.06/46.43)	YSGCTTENLVQQIGERGIHFSIVSPRKLPALRLL..FEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.42|      41|      74|     428|     472|      10
---------------------------------------------------------------------------
  428-  472 (63.96/60.06)	PCQVYVNHGenLKTEQwpQKLIMQLIP.QQ..LLTTLGPLFRNSRMVQ
  505-  548 (63.47/43.72)	PCEVRVLML..LYSSK..KKIFMGLIPyDQsgFVNGIRQVITNHKQVQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18503 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGSAPGPLQPKQPVPLPPAAPSGATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPPLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPGGVSGPSPAQLGAPALG
2) HKQVQQQKLEQQQRGLQLRPPQPQPQGTVGASGATGQPQPQSTAQPPPVAPQGPPGTASGPPPPGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGAPALLPPPHQGLGQPQLGPPLLHPPPAQSWPTQLPPRAPLPAAKRKKEGEG
232
544
390
701










Molecular Recognition Features






MoRF SequenceStartStop




NANANA