<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18481

Description Transducin beta like 1 X-linked
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAASAATSTTAGVSQQNPPKNAQTPVNGEEIRAHDINNHVKPMEVDGEVEIPSNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGCSTQLVLRHCIREGGHDVPSNKDVTSLDWNTDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCERPVKTFQGHTNEVNAIKWDPSGILLASCSDDMTLKIWSMKQEVCVHDLQAHSKEIYTIKWSPSGPATSNPNSKIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQNGNLVYSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length517
PositionTail
OrganismCebus capucinus imitator
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Platyrrhini> Cebidae> Cebinae> Cebus.
Aromaticity0.08
Grand average of hydropathy-0.298
Instability index36.21
Isoelectric point5.50
Molecular weight56440.42
Publications









Function






Annotated function


GO - Cellular Component
histone deacetylase complex	GO:0000118	IEA:Ensembl
mitotic spindle	GO:0072686	IEA:Ensembl
transcription repressor complex	GO:0017053	IEA:Ensembl

GO - Biological Function
beta-catenin binding	GO:0008013	IEA:Ensembl
histone binding	GO:0042393	IEA:Ensembl
protein C-terminus binding	GO:0008022	IEA:Ensembl
protein domain specific binding	GO:0019904	IEA:Ensembl
transcription corepressor activity	GO:0003714	IEA:Ensembl
transcription factor binding	GO:0008134	IEA:Ensembl
transcription regulatory region sequence-specific DNA binding	GO:0000976	IEA:Ensembl

GO - Biological Process
negative regulation of transcription by RNA polymerase II	GO:0000122	IEA:Ensembl
positive regulation of canonical Wnt signaling pathway	GO:0090263	IEA:Ensembl
positive regulation of transcription by RNA polymerase II	GO:0045944	IEA:Ensembl
proteolysis	GO:0006508	IEA:Ensembl
sensory perception of sound	GO:0007605	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18481
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     399.62|      40|      40|     325|     364|       1
---------------------------------------------------------------------------
  168-  197 (32.74/17.86)	...............LRGHESEVFICAWNPVS.........dlL.A.SGS.GDSTAR
  198-  215 (24.83/11.62)	IW.NL.NEN..................................S.N.GCS.TQLVLR
  216-  251 (36.35/20.71)	HCiREG.GHD..VPS....NKDVTSLDWNTDG.........tlL.A.TGS.YD.GF.
  252-  294 (36.29/20.66)	.A.RIWTEDGnlASTLGQHKGPIFALKWNRKG..........nY.IlSAG.VDKTTI
  295-  335 (54.24/34.82)	IW.DAHTGEA..KQQFPFHSAPALDVDWQNN..........ttF.A.SCS.TDMCIH
  336-  377 (62.77/41.56)	VC.RLGCERP..VKTFQGHTNEVNAIKWDPSG.........ilL.A.SCS.DDMTLK
  378-  428 (57.16/37.12)	IW.SMKQEVC..VHDLQAHSKEIYTIKWSPSGpatsnpnskimL.A.SAS.FDSTVR
  432-  470 (50.32/31.73)	VE.RGVC.....IHTLTKHQEPVYSVAFSPDG..........kYlA.SGS.FDKCVH
  471-  512 (44.92/27.47)	IW.NTQNGNL..VYSYRG.TGGIFEVCWNARG........dkvG.A.SASdGSVCV.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18481 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SAATSTTAGVSQQNPPKNAQTPVNGEEIRAHDINNHVKPMEVDGEVEIPSNKA
113
165










Molecular Recognition Features






MoRF SequenceStartStop




NANANA