<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18478

Description Uncharacterized protein
SequenceGYKSTFFNGDPGGDYGGTQYSLVVFSTVDCAPESYVQCHAPASSAYEFVTWLDGIKFVGGGGESCSLIAGLSTALPLFSDFKTLREQIGQTHRLCLLICTSPPYLSPAVDSTTCSGCTTETLVQQTGERGIHFSIVSPRKLPKAAPATLLEPLQPQTVVSQDPRHVVLVRGLVLPVGGGSAPGPLQPKQPVPLPPAAPSGATLSAAPQQPLPPVPPQCQVPGNLSAAQVAAHNAVEAKNQKAGLDPRFSPITPLQQAAPGVDPPFSQAPAPPLPPGPSSPPAWSPPWPLAQAWLPQRNPGHHLWQAPGPSPAQLGAPALASGLEWQEKFKPASVDAKTKLTQSLPCQVYVNHGENLKTEQWRQKLILQLIPQQLLTTLGPLPGLSQRPLLHHGQWLCRLCALPPQGALEVRALMLLYSSKKIFMGLILYDQSDFLSGIRRVITNHKQVQQQKLEQQQRGMGGQQVPPGLGPIMEDQARPSQNLQLQLHTPQPQPQGTIGASGATGQPQTQSTARLPAGAPQGPPGAASDPPPPGPILWSQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGAPALLPPPHQGLGSPTWGPHSCIHHPPSPGPHSFPHRLHCQVPQPGLQPSVTEDGILMDLIGIPSTQ
Length643
PositionUnknown
OrganismCebus capucinus imitator
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Platyrrhini> Cebidae> Cebinae> Cebus.
Aromaticity0.05
Grand average of hydropathy-0.297
Instability index63.40
Isoelectric point8.53
Molecular weight67966.93
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18478
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.47|      17|      18|     550|     566|       2
---------------------------------------------------------------------------
  267-  283 (26.84/ 6.33)	QAPAPPLPPGPSSPPAW
  550-  566 (35.63/11.88)	SLLLNPPPPQTGVPPPQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     229.57|      52|     115|     347|     406|       4
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  185-  218 (41.39/ 8.20)	....................LQ......PK.QpvPLPPAAP.SGATlsAAP.....QQ..PLPPVPPQC
  347-  406 (82.37/40.63)	QVYVNHgenlKTEQwRQKLILQ...L.IPQ.Q..LLTTLGPLPGLS..QRPllhHGQWLCRLCALPPQG
  440-  479 (50.08/12.27)	RVITNH....KQVQ.QQKLEQQqrgM.GGQ.Q..VPPGLGPIMEDQ..ARP..................
  481-  522 (55.73/14.35)	................QNLQLQ...LhTPQpQ..PQGTIGA.SGAT..GQP...QTQSTARLPAGAPQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.55|      45|     116|      17|      61|       7
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   17-   61 (82.37/50.83)	GTQYSLVVFSTV.DCAPESYVQCHAP...ASSAYEFVTWLDGIKF.VGGG
  130-  179 (63.18/37.02)	GIHFSIVSPRKLpKAAPATLLEPLQPqtvVSQDPRHVVLVRGLVLpVGGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.55|      15|     244|     285|     299|       8
---------------------------------------------------------------------------
  285-  299 (32.79/10.65)	PPWPLAQAWL.........PQRNP
  530-  546 (30.03/ 9.04)	PPPPGPILWS.......qnPGANP
  602-  625 (25.73/ 6.53)	PPSPGPHSFPhrlhcqvpqPGLQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18478 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGSAPGPLQPKQPVPLPPAAPSGATLSAAPQQPLPPVPPQCQVPGNLSAAQVAAHNAVEAKNQKAGLDPRFSPITPLQQAAPGVDPPFSQAPAPPLPPGPSSPPAWSPPWPLAQA
2) HKQVQQQKLEQQQRGMGGQQVPPGLGPIMEDQARPSQNLQLQLHTPQPQPQGTIGASGATGQPQTQSTARLPAGAPQGPPGAASDPPPPGPILWSQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGAPALLPPPHQGLGSPTWGPHSCIHHPPSPGPHSFPHRLHCQVPQPGLQPSVTEDGILMDLIGIP
178
445
292
640










Molecular Recognition Features






MoRF SequenceStartStop




NANANA