<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18148

Description Transcription elongation factor A2
SequenceMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKARERGRGTPLPTPSRDASEAQDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRSKCREMLTAALQTDHDHVATGADCKRLSAQIEEYILCAGAVGPGFWRSHEAAWPGALWWLLDATAYCPGVTHLSRGHPPGWSPAWVVKLSQPRRELILPAGGT
Length241
PositionUnknown
OrganismAotus nancymaae (Ma's night monkey)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Platyrrhini> Aotidae> Aotus.
Aromaticity0.05
Grand average of hydropathy-0.397
Instability index62.15
Isoelectric point9.51
Molecular weight26437.21
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18148
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.40|      17|      18|      82|      99|       1
---------------------------------------------------------------------------
   82-   99 (27.65/18.11)	SDAKARERGRGtPLP.TPS
  103-  120 (27.75/13.74)	SEAQDPSRKRP.ELPrAPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.68|      11|      24|     172|     182|       2
---------------------------------------------------------------------------
  172-  182 (22.08/16.22)	YILCAGAVGPG
  197-  207 (23.60/17.84)	WLLDATAYCPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.93|      11|      25|     185|     196|       3
---------------------------------------------------------------------------
  185-  196 (20.01/11.72)	RSHEAAWPGAlW
  213-  223 (26.91/12.38)	RGHPPGWSPA.W
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18148 with Med26 domain of Kingdom Metazoa
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