<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18103

Description U-box domain-containing protein 35-like
SequenceMLLPFKSLCEQRKVRVDVVVIESDDVATAVAEEVSKNVITKLVLGASSSGIFKRCLVLGVIYVWIAMLSIRLPICAHLNFISKQKGLSAKISVRTPRFCTVYAVSKGKLSIRQSDMQTDGNIVDDTTSETSFSSSSSSNYTSTSQTDFGSVASSAALHSYPLTTRRHKALSSIDQTLLSTSPNLSETNHFRGQSLDLGRKNDAISSDIDHALTQASSGGSISDTESSIYGQNHAKYVPQGTKPPKPNRQENYNLELEKLRLELRHAQGMHAVAQSENIDASQKLNELNKRRLEESMKMKEIVANEEMAEELANQEREKYEAAAREAEYLKHRAGREAAERKEAELKAIHAAKEKEKLEGALSGSTPPYRIFTWDEIVSATSSFSEDLRIGMGAYGVVYKCTLHYTTVAVKVLHSNGNCQSKQFQQELEILSRIHHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLQKNSNDPIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGHNLVSKIGDVGLSTILNSDDLSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVILQLLTAKPAIALTHLVETAIDGGNLSDVLDPKAGSWPLQETLDIARLALSCAEMKRKDRPDLKNHVLPMLDRLKHVADEAQAQYSASIVTIKSRAPNHFICPILQDVMDDPCVAADGYTYDRNAIEKWLLKNDKSPMTNMVLPHKHLIPNYTLLSAILEWKTS
Length737
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.06
Grand average of hydropathy-0.309
Instability index39.60
Isoelectric point6.49
Molecular weight81771.12
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18103
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.36|      49|      71|     507|     557|       1
---------------------------------------------------------------------------
  507-  557 (76.53/55.87)	KPAnILLGHnLVSKIGDVG.LSTILNSDDLSAMYKDTAPVGTLSYIDPEYQR
  581-  630 (80.83/50.00)	KPA.IALTH.LVETAIDGGnLSDVLDPKAGSWPLQETLDIARLALSCAEMKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.01|      12|      15|     127|     138|       2
---------------------------------------------------------------------------
  127-  138 (21.14/12.95)	TSETSFSSSSSS
  143-  154 (21.87/13.64)	TSQTDFGSVASS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.57|      46|      67|     249|     296|       3
---------------------------------------------------------------------------
  249-  296 (70.40/54.15)	QENYNLELEKLRLE.LRHAQGMHAVAQSE.NIDASQKLNElnKRRLEESM
  314-  361 (63.18/42.10)	QEREKYEAAAREAEyLKHRAGREAAERKEaELKAIHAAKE..KEKLEGAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.38|      19|      19|     188|     206|       4
---------------------------------------------------------------------------
  188-  206 (33.14/20.76)	NHFRGQSLDLGRKNDAISS
  209-  227 (29.24/17.44)	DHALTQASSGGSISDTESS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.35|      17|      21|      66|      83|       6
---------------------------------------------------------------------------
   66-   83 (26.11/21.33)	AMLSIRLP.ICAhLNFISK
   89-  106 (26.24/15.63)	AKISVRTPrFCT.VYAVSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18103 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRHAQGMHAVAQSENIDASQKLNELNKRRLEESMKMKEIVANEEMAEELANQEREKYEAAAREAEYLKHRAGRE
2) SPNLSETNHFRGQSLDLGRKNDAISSDIDHALTQASSGGSISDTESSIYGQNHAKYVPQGTKPPKPNRQENYNLELEKLR
263
181
336
260










Molecular Recognition Features






MoRF SequenceStartStop




NANANA