<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18102

Description Mediator of RNA polymerase II transcription subunit 33a-like protein
SequenceMRHLIVEACIARNLLDTSAYLWPGYVNGHINQIPQCMPTQVPGWSSFMKGSPLTSVMVNALVSSPATSLAELEKIFEIAIAGSEDEKIYAATILCGASLIRGWNIQEHTVHFILRLLSPPVPVENTEGNNYLISYALILNALFVGIASIDCIQVFSLHGLVPQLACSLMPICEVFGSCMPNISWKLTSGEEISAHAVFSNVFILLLKLWKFNCPPLEHGIGDTPTVGSQLTPEYLLMVRNSHLMSAGNIRKDRNRRRLSEIASLSSPNSVFVDSFPKLKVWYRQHQACIASTLSGLVHGTPFHQIVEGLLNMMFRKINRGNQTTIASGSSSSSGPGNDDASTVPKLPAWDILEAIPFVVDAALTACAHGRLSPRELATGLKDIADFLPASLATIISYFSAEVTRGVWKPAFMNGTDWPSPAANLQNVEEQIKKILAETGVDVPSLTSGDNNSPATLPLPLAAFTSLTITYKVDRSSERFLQLAGQTLEGLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHNSDAVVQLVKSCFTATLGMSSSRISCSGGVGALLGHGFKSNLSGGICPVAPGILYLRAYRSVRDIVFLTEEIVSILMQSVREIVCGGLPKQQLKKLKPTKDGVGIKYGQVSLAASMTRVKLAAALGASLVWISGGLTLVQLLINETLPSWFISVHRSDQEEEKSNGMVSMLGGYALAYFAVLSGAFAWGADSSSSASKRRPKVLGTHLEFLASALDGKISLGCDPATWRAYVSGFVSLMVGCTPNWVLEVDVNVLKRLSNGLRQLNEEELALALLGAGGVGTMGAAAELIIDTEM
Length823
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.08
Grand average of hydropathy0.240
Instability index44.07
Isoelectric point7.21
Molecular weight88570.54
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18102
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.39|      11|      16|     745|     756|       1
---------------------------------------------------------------------------
  745-  756 (20.68/17.43)	GKISL..GCDPaTW
  762-  774 (20.70/11.78)	GFVSLmvGCTP.NW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     333.40|      98|     319|     104|     203|       3
---------------------------------------------------------------------------
  104-  203 (161.53/96.60)	NIQEHtVHFILRLLSPPVPVENTEGNNYLISYALILNAlFVGIA...SIDCIQVFSLHGLVPQLACSLMPICEVFGSCMPNIS..WK..LTSGEE.ISAHAVFS...NVFI
  380-  425 (28.76/ 9.67)	........................................................LKDIADFLPASLATIISYFSAEVTRGV..WKpaFMNGTDwPSPAANLQ.......
  426-  527 (143.12/78.43)	NVEEQ.IKKILAETGVDVPSLTSGDNNSPATLPLPLAA.FTSLTityKVDRSSERFLQ.LAGQTLEGLAAGCPW..PCMPIVAslWT...QKAKR.WSDFLIFSasrTVFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.44|      49|      67|     250|     299|       4
---------------------------------------------------------------------------
  250-  299 (82.66/56.59)	RKdRNRRRLSEIASLSS....PNSVFVDSFPKLKVW..YRQHQACIASTLSGLVHG
  315-  369 (76.78/47.75)	RK.INRGNQTTIASGSSsssgPGNDDASTVPKLPAWdiLEAIPFVVDAALTACAHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.28|      13|      14|     545|     558|       5
---------------------------------------------------------------------------
  545-  558 (19.13/13.82)	LGmSSSRISCSGGV
  562-  574 (24.14/12.49)	LG.HGFKSNLSGGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.44|      12|      18|     638|     649|       7
---------------------------------------------------------------------------
  638-  649 (18.54/10.36)	VSLAASMTRVKL
  658-  669 (20.91/12.64)	VWISGGLTLVQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18102 with Med33 domain of Kingdom Viridiplantae
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