<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18100

Description U-box domain-containing protein 33-like (Fragment)
SequenceGAKFPASSLKDQEVQAFREIERQNMHKTLDEYLRICQRMGVRAEKLHIEMDNIEKGIIELISQYGIRKLIMGAASDKNYSRRMMDLRSRKAIYVCEQAPASCHIQFICKGHLIHTRDRSLDERNVEIASPLTPQVPNSVRSLRSQSITLGQNHRTDSSSSIQELFRRARSANDVQRASISSPNDTEGFSTPSNRRGTEVSSDDSDTISRTSPSGLSTFSDSAVEPAVTPNLVAESSMNALDLTFSRLDIKEDLHRISPPSVLDGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKVSESLYTEELNQRKMVEEELEKEKEEVESVMRQRDKVNEELQLALDLKSSLESQLASSEVMIQELEQKIISAVELLQSYKNERDELQMQRDNALREAEDLRKKQGEGSSSYVAQLFSEFSFSEIEEATSNFNPSLKIGEGGYGNIFKGLLRHTEVAIKVLHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNYENSSNNNTLFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAVDTGKLTSLLDPLAGDWPFVQAEQLAHLALRCCEMNRKSRPDLHSDVWRILDAMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLSHQNLVPNRGLRSAIQDWLQSH
Length799
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.06
Grand average of hydropathy-0.496
Instability index53.59
Isoelectric point5.53
Molecular weight89670.83
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18100
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.66|      13|      18|     179|     191|       1
---------------------------------------------------------------------------
  179-  191 (24.29/12.79)	ISSPN.DTEGFSTP
  199-  212 (18.37/ 8.11)	VSSDDsDTISRTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.75|      35|      50|     478|     515|       2
---------------------------------------------------------------------------
  478-  515 (53.38/50.49)	PLEFQQEVDVLSKLrHPNLITLIGACPEswSLVYEYL.P
  531-  566 (59.37/41.76)	PLSWQTRIRIAAEL.CSALIFLHSSKPH..SIVHGDLkP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.47|      25|      44|     266|     309|       3
---------------------------------------------------------------------------
  266-  299 (36.31/51.46)	VNDTLY.DQLEQamseannatRHAYQETFRRGKAE
  311-  336 (36.16/14.66)	VSESLYtEELNQ.........RKMVEEELEKEKEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18100 with Med32 domain of Kingdom Viridiplantae
Unable to open file!