<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18097

Description U-box domain-containing protein 35-like
SequenceMWKGSRKGGGAGGGGGGGNGLVAVAIDKDKGSQYALKWAADNLLTRGQTVILIHVSQVAGTTSSSSRGSEAAIICNVSSTSAASSPQRNQLDNATKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEYVSHAAIENLVIGSPSRHGFIRFKSSSTPSSISKGAPDFCNVYVISKDQICSRRMNLRDRTSMKPHGWQDESMRSPFRRGARGTSGMLCVDFTESDTDISFVSSGRPSSACSSSLYDYIDSGRTSRVSTSSDRSFGSNRLGIKFTDPGSPDTSFSQDTSRTSFSYSSQNMDETEADMRRLKLELKQTMEMYNTACREALTAQNKLMEMSNWKIEEEKKLEEARLSQEAALAIAEKEKARSKAAIETAEAARKIANVESHRKSRVPIKSLKEAEDMRKLLDNLAQTDVRYRRYSIEEIEAATNMFSEKLKIGEGGYGPVYKCYLDHTPVAVKVLSPDAAQGKSQFQQELDIPPQVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLEDCLNRKKKGGRVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPVMAENVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHAEQSIENGTFEEMLDQSLSHWPIQESLTLANIAVNCAQLRRKDRPDLAKVVLPELVKLREFAEENMGPIFLGGGLTFSSSGSAEPSPNHSEVSVQQDVMSDPQLVNSGSSISPHTSSTPTEENP
Length771
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.06
Grand average of hydropathy-0.377
Instability index49.51
Isoelectric point6.29
Molecular weight84670.89
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18097
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.94|      46|      95|     297|     344|       1
---------------------------------------------------------------------------
  297-  344 (71.53/62.48)	QNMDETEaDMRRLKLELKQTMEMYNTACREALTAQNKLMEmSNWKIEE
  396-  441 (75.41/55.27)	KSLKEAE.DMRKLLDNLAQTDVRYRRYSIEEIEAATNMFS.EKLKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.56|      63|     146|     490|     599|       2
---------------------------------------------------------------------------
  490-  557 (106.91/155.47)	RHPnlvLLLGACPEYGIL..VYEYMANGSL.....EDCLNRKKKGgrVLCWQLR.................FRIAAEIATGLLFL.........HQTKPEP
  639-  734 (83.65/41.57)	RHP...MGLAHHAEQSIEngTFEEMLDQSLshwpiQESLTLANIA..VNCAQLRrkdrpdlakvvlpelvkLREFAEENMGPIFLgggltfsssGSAEPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.57|      33|      93|      61|      95|       3
---------------------------------------------------------------------------
   61-   95 (51.52/37.41)	TTSSSSRGseAAIICNVSSTSAAS.SPQRNQLDNAT
  157-  190 (57.05/35.52)	TPSSISKG..APDFCNVYVISKDQiCSRRMNLRDRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.96|      18|      18|     351|     368|       5
---------------------------------------------------------------------------
  351-  368 (28.12/23.05)	ARL.SQEAALAIAEKEKAR
  371-  389 (24.83/19.42)	AAIeTAEAARKIANVESHR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18097 with Med32 domain of Kingdom Viridiplantae
Unable to open file!