<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18093

Description U-box domain-containing protein 35-like
SequenceMVTLLNAEGTLVFEPDEEDVANVFGNLRGLCQRKVVTVKEAVVDDNDVVKGLLDFANKNLVHSIVIGASTKNHLPSLKKFKAFNDTPTAMMKSAPDYCSVYVISKLKIVSARSAVRSMANQTSPIKQLPFQVSSQSEFEGGIRSILPRTGETNEASESRSFDSIVGTVKGTARERPRSAGSNQSLDNIDLPGGRGRQWASMDEREMVTLAPIDDVNSDLDLIDSYGTKPTNLTSQELEAEMKRLRRELKQTMDMYSSACKQAISAKNQAEQIRQWKLEGEKKAVEARLSQEAALAMAEREKARAKAALEAAEEAKRKAEQEVQRRREVEMKARKEAEERDRVLTALAQKDNRYRKYTMQEIEVATEKFSLSKKLGEGGYGPVFKGHLDHTAVAIKLLNPEASQGRKQFQQEVEVLSCIRHPNMVLLLGACPEHGCLVYEFMDNGSLEDRLFRRQNSKPLSWQKRFQIAADIATALLFLHQTKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPPSVADNVTQYYMTSAAGTFCYIDPEYQQTGILTTQSDVYSLGIMLLQIITAKPPMGLAHHVKKAVENDQIEEILDPVVTDWPVEAALSFAKLALSCTELSKKDRPSLATVILPELNRLRDLGDTDNHVFTDTKNNCHTPRPPMAN
Length661
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.05
Grand average of hydropathy-0.451
Instability index40.44
Isoelectric point6.89
Molecular weight73742.25
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18093
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.23|      48|      48|     258|     305|       1
---------------------------------------------------------------------------
  173-  245 (51.82/25.15)	RERPRSA......GSNQSLDNIDlPGGRGRQWASMDEREMV.TlAPIDDvnsdldlidsygtkptnltsqelEAEMKRLR
  246-  298 (66.18/33.81)	RELKQT.mdmyssACKQAISAKN.QAEQIRQWKLEGEKKAV.E.ARLSQ.......................EAALAMAE
  299-  348 (59.22/29.61)	REKARAK.....aALEAAEEAKR.KAEQEVQRRREVEMKARkE.AEERD.......................RVLTALAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.13|      11|      20|     103|     113|       3
---------------------------------------------------------------------------
  103-  113 (17.30/10.97)	ISKLKI.VSARS
  125-  136 (14.84/ 8.45)	IKQLPFqVSSQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.08|      15|     536|      38|      54|       4
---------------------------------------------------------------------------
   38-   54 (20.60/23.49)	VKEAVvdDNDVVKGLLD
  577-  591 (25.48/19.76)	VKKAV..ENDQIEEILD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18093 with Med32 domain of Kingdom Viridiplantae
Unable to open file!