<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18089

Description Mediator of RNA polymerase II transcription subunit 23-like protein (Fragment)
SequenceMAETTVIHQCTQLLSPSADPSYVTTYLSHSFPQHRQYLCAGALILMHGHAENINSGNLARVLREFSPEEVTSNIYTMVDVMLHHMQIELQQGHLIQDLMLKACASLAFFVWTNELLPLDILLLALADRDDDPHALRIVISLLDRQELQQRVKLFCITRGHPEHWLYTGMFKRVDLQKALGNHLSWKDRNPVFFDDIAARLLPVIPLIIYRLIENDAMDTAERLLALYSPLLAYYPLRFTFVRDILAYFYGHLPGKLIVRILNVLDISKIPFSESFPQQISSSNPAMCPPLDYFTTLLLGIVNNVIPPLHNNSKSGPIGDASNSAMRTAQNKPPAVSQSGPANASEGQKAFYQIQDPGTYTQLVLETAVVEILSLPVSASQIVQSLVQIVVNIQPTLIQSNDSLHGSSNGIGQGSVLPTSPSGGSTDSLGASRSTPSASGVNTTNFASQSGYTSQQLSCLLIQACGLLLSQLPSDFHAQLYLEATRIIKENWWLTDVKRSLAEIDSAVGYALLDPTWAAQDNTSTAIGNVVALLHSFFSNLPQEWLEGANVIIKQLRPVTSVAMLRIAFRIMGPVLPKLANAHTLFSK
Length587
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.08
Grand average of hydropathy0.095
Instability index45.59
Isoelectric point6.04
Molecular weight64682.56
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18089
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     265.35|      82|     109|     257|     339|       1
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  257-  339 (136.81/79.71)	IVRILNvLDISKIPFSESFPQQISSSNPAMCPPLDYFTTLLLGIVN.NVIPPLHNNSKSGPIGDASNSAMRTAQNKPPAVSQSG
  368-  450 (128.54/71.12)	VVEILS.LPVSASQIVQSLVQIVVNIQPTLIQSNDSLHGSSNGIGQgSVLPTSPSGGSTDSLGASRSTPSASGVNTTNFASQSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.69|      15|      21|     195|     209|       2
---------------------------------------------------------------------------
  195-  209 (27.06/14.74)	DIAARLLPV.IPLIIY
  218-  233 (21.64/10.51)	DTAERLLALySPLLAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.48|      19|     157|      75|      98|       4
---------------------------------------------------------------------------
   44-   62 (31.43/22.50)	ILMHGHAENINSGNLARVL
   80-   98 (33.05/17.33)	VMLHHMQIELQQGHLIQDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18089 with Med23 domain of Kingdom Viridiplantae
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