<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18088

Description Mediator of RNA polymerase II transcription subunit 16-like protein
SequenceMNQQTTATKESQEVEPLAQSIPESQDLQENNNESVSVEEKEVLAEEKSPIDQSMEEDSVNPATVFTIRLKQSKSNLQHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPPNLVRDASCWQREHEWRQDIAVATKWLSGVSPVCSYVVLC
Length222
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.06
Grand average of hydropathy-0.335
Instability index69.73
Isoelectric point4.98
Molecular weight24760.67
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18088
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|      21|     154|     171|       1
---------------------------------------------------------------------------
  132-  146 (26.90/10.16)	PTECAVFNVIAD.SPR
  156-  171 (24.31/20.96)	PTSCPRALLIANfHGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.79|      18|      25|      10|      33|       2
---------------------------------------------------------------------------
   10-   30 (22.20/27.79)	ESQEVepLA..QSiPESQDLQEN
   38-   57 (26.59/10.74)	EEKEV..LAeeKS.PIDQSMEED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18088 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNQQTTATKESQEVEPLAQSIPESQDLQENNNESVSVEEKEVLAEEKSPIDQSMEED
1
57










Molecular Recognition Features






MoRF SequenceStartStop




1) EPLAQSIPESQDLQE
15
29