<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18087
Description |
Mediator of RNA polymerase II transcription subunit 13 (Fragment) |
Sequence | RYQDDWLKASANCLQHWEKAPLEPYALQKPITYHVVCPDIDPLTSAAADFFQQLGTVYEMCKLGTHSPLILGNQMEIESAKSSSCGFVLLDCPQSMKIESSNASLVGSVSDYFLSLSNGWDLTSYLKSLSKALRALNLSSCFSANPAEGSNSSCLVIYVVCPFPDPSAILQTVTESSVAIGSVIQQSDRERRSSLHNQVVKALSGLAAVDEASASNIPVLSGFSIPKLVLQIVTVDAIFRVTSPSVSELVILKETAFTVYSKARRVSRGISSDSSQLAFSSRSQSVLPQMPSPISGMWKDCVGPRMAGHSLPRESDIDTSLRPGTWDNSWQPTRSGVLNCDPSRTGDIFPHDEIRYMFEPLFILAEPGSPEHGISVIGSPSSEASKALADDSSGNHVQSASTAGSVDSASSIDGSGSDQKTHPSLHCCYGWTEDWRWLVCIWTDSKGELLDSNIFPFGGISSRQDTKGLQCLFVQVLQQGCVILQSCDPSLAKPRDFVIARIGGFYELEYLEHGPDIGIESPRIHDLEGLYMLKWQKAIYSAGGSEMKRWPLQLRKSLSDGVSSTSNGSSLQQSDMSLMPERTLPSSPSPLYSPHPKPTGFIKGGLGQSASRKQIMGGHSMVDSSRGLLHWAQSISFVAISMDHTLQPVIPADSSSPGYVEGFTPVKSLGSTSSAYILIPSPSMRFLPPTSLQLPTCLTADSPPLAHLLHSKGSALPLSTGFVVSKAVPSMRKDYRSNLKEEWPSVLSVSLIDYYGGSNIPQEKIVRGINKQGGRGLSWEAKDFETESHLILESLAAELHALSWMTVSPSYLERRTALPFHCDMVLRLRRLLHFADKELSKQSEKS |
Length | 846 |
Position | Kinase |
Organism | Trifolium pratense (Red clover) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade>
NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
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Aromaticity | 0.07 |
Grand average of hydropathy | -0.168 |
Instability index | 62.98 |
Isoelectric point | 6.08 |
Molecular weight | 92022.33 |
Publications | PubMed=24500806
PubMed=28382043
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
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GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP18087
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 924.23| 270| 296| 181| 469| 1
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29- 170 (110.24/47.16) ..........................................................................................................................................................................KPITYHV.V.CpdiDPltSAAADFF..QQLG..TV..YE.MCKLG.THSPlilGNQMEIESAKS....SSCGFVLLDCPQSMKIESsnASLVGSVsDYFLSL.SNGWDLTSYlKSL........SKALRALnlsSC..FSANPAEGSNSSCLV....IYVVCPFPDPSAiL
181- 469 (429.44/263.99) GSVIQQSDRERRSSLHNQVVKALSGLAAVDEASASniPVLsGFSIPKL..VLQIVTVDAIFRVTSPSVSElviLKETAFTVYskaRRVSRGISSDS..SQLAFSSRS...QSVLPQMPSPI.......SGMWKDCVGPR......MAGHSLpresdIDTSlRpGTWdnSWQPTRSGV.LNC...DP..SRTGDIFPHDEIR..YM..FEPLFILAePGSP...EHGISVIGSPS....SEASKALADDSSGNHVQS..ASTAGSV.DSASSIDGSGSDQKTH.PSLHCCY..GWTEDWRWL...VCI.WTDSKGELLDSNIFP....FGGISSRQDTKG.L
480- 777 (384.55/198.22) GCVILQSCDPSLAKPRDFVIARIGGFYELEYLEHG..PDI.GIESPRIhdLEGLYMLKWQKAIYSAGGSE...MKRWPLQLR...KSLSDGVSSTSngSSLQQSDMSlmpERTLPSSPSPLysphpkpTGFIKGGLGQSasrkqiMGGHSM.....VDSS.R.GLL..HWAQSISFVaISM...DH..T.LQPVIPADSSSpgYVegFTPVKSL...GST...SSAYILIPSPSmrflPPTSLQLPTCLTADSPPL..AHLLHSK.GSALPLSTGFVVSKAV.PSMRKDYrsNLKEEWPSV...LSVsLIDYYG...GSNI.PqekiVRGI.NKQGGRG.L
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