<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18077

Description Pre-mRNA-processing protein 40a-like protein (Fragment)
SequenceFRPVIHPQQGQPFVPMTSQQFGHTGHAVPSSNVGMPVIQGQQLQYSQQMQQLTPRQIQPGHPVSSSQGIPMPYIQTNRPLTSVPQHAQQAVPHISNHMPGLSGAPPQSSYTFAPSYGQQQDNANALPQFQHPPQMLAPPAGQPWSSSVPQSAAAVTPVQPAGVQSSGTASNDAATNTTNQNSASDWQEHVAGDGRRYYYNKNTRQSSWEKPLELMSPLERADASTVWKEFTSSDGRKYYYNKVTQQSTWTIPEELKLAREQAHKTISQGMVSETSDTSNATASSAAASTPANAASSNTLTSNGFASSPTSITPIVATDQQRMVSGLSGTSVSHSVVTSSTTGVEPSTAVTVSTAPTTVAGSSGVAASSLDSKIPSIVENQATHDSTSSVNGAPLQDMEEAKRGLPVVGPTNVTPSAEKTNDGETFVYANKQEAKNAFKALLESVNVHSDWSWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKIEAEEKRIKQKKAREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRCLLLEKLDRLVVYQDYIRDLEKEEEEHKRIQKERIRRGERKNRDAFRKLLEEHIADGVLTAKTQWRNYCLKVKELPQYQAVASNTSGSTPRDLFEDVFEDLEKKNDIITLYASKLMVYRYSSRHPVLPFINQNALSLE
Length738
PositionUnknown
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.07
Grand average of hydropathy-0.769
Instability index51.34
Isoelectric point6.47
Molecular weight82515.75
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18077
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.56|      30|      32|       3|      34|       1
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    3-   32 (61.02/25.67)	PVIHPQQ...GQPFVPMTSQQFGHTGHAVPSSN
   36-   67 (45.92/19.66)	PVIQGQQlqySQQMQQLTPRQI.QPGHPVSSSQ
  106-  127 (24.62/ 7.41)	....PQS...SYTFAPSYGQQ.QDNANALP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.24|      38|      38|     186|     223|       2
---------------------------------------------------------------------------
  144-  173 (25.08/11.63)	WSSSV.............PQSA.....AAVTPVQPAgvqssgtasnDA
  186-  223 (74.93/50.60)	WQEHVAGDGRRYYYNKNTRQSSWEKPLELMSPLERA..........DA
  227-  262 (67.22/44.57)	WKEFTSSDGRKYYYNKVTQQSTWTIPEEL..KLARE..........QA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      97.76|      20|      20|     462|     481|       3
---------------------------------------------------------------------------
  462-  481 (34.50/24.36)	DKRYNAL....KTLGERKQAFNEY
  492-  504 (18.18/ 9.29)	EKRI...........KQKKAREEF
  530-  549 (29.58/19.83)	DERFNAV....ERVRDREDLFESY
  556-  577 (15.51/ 6.83)	KEKENAAeehrRNLAEYRK.FLE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      59.32|      17|      17|     307|     323|       4
---------------------------------------------------------------------------
  294-  316 (21.11/10.75)	ASSNTLTsngfasSPTSITPIVA
  317-  336 (21.91/11.47)	TDQQRMV...sglSGTSVSHSVV
  366-  377 (16.31/ 6.44)	AS...........SLDSKIPSIV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18077 with Med35 domain of Kingdom Viridiplantae
Unable to open file!