Description | Pre-mRNA-processing protein 40a-like protein |
Sequence | MSCIISSIKKLARSEAKNAFKALLESVNVHSDWSWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKIEAEEKRIKQKKAREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRCLLLEKLDRLVVYQDYIRDLEKEEEEHKRIQKERIRRGERKNRDAFRKLLEEHIADGVLTAKTQWRNYCLKVKELPQYQAVASNTSGSTPRDLFEDVFEDLEKKYHEDKTLIKDTLKSGKITVVTTSVFEDFKSAVLEEAACETISEINFKLLFEELVERAKEKEEKEAKKRQRLADDFTNLLYSFKEITITSIWEDCKPLFEETQEYKSIGDESSSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKERHKKDESDSDNQDISDSHGYREERKKDKEKERKHRRRHQSSIDDVDSEKDEKEESRKSRRHGSDRKKSRKHANSPDSDNESRHKKHKREHGDGSRRTGLNDDLEDGELGDDGEV |
Length | 572 |
Position | Unknown |
Organism | Trifolium pratense (Red clover) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium. |
Aromaticity | 0.07 |
Grand average of hydropathy | -1.450 |
Instability index | 49.55 |
Isoelectric point | 6.52 |
Molecular weight | 68619.72 |
Publications | PubMed=24500806 PubMed=28382043 |
Annotated function |
|
GO - Cellular Component | nucleus GO:0005634 IEA:EnsemblPlants |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro |
Binary Interactions |
Repeats | >MDP18076 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 122.29| 26| 28| 412| 437| 1 --------------------------------------------------------------------------- 412- 435 (33.92/12.27) ....KEKA.KEKERKREEEKAKK.EKEREE 436- 464 (28.00/ 8.57) KEkrKEKEkKEKDREREKEKSKE.RHKKDE 467- 490 (30.51/10.14) SD..NQDI.SDSHGYREERKKDK.EKER.. 513- 539 (29.85/ 9.72) SR..KSRR.HGSDRKKSRKHANSpDSDNES --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 438.54| 65| 65| 86| 150| 2 --------------------------------------------------------------------------- 20- 82 (82.48/39.93) .FKALLESV....NVHSDWSWEQAMREIIND..KRY.NAL...KTLGERKQ........AFNEYLGQRKKIEAEE.KRIKQKK 86- 150 (104.83/52.70) EFTKMLEEC...KELTSSTRWSKAISMLEND..ERF.NAV...ERVRDRED........LFESYMVELERKEKEN.AAEEHRR 154- 212 (85.54/41.68) EYRKFLESC...DFVKVNSHWRKIQDRLEDD..DRC.LLL...EKL.DRLV........VYQDYIRDLE...KEE...EEHKR 228- 291 (66.70/30.91) AFRKLLEEHiadGVLTAKTQWRNYCLKVKEL..PQY.QAVasnTSGSTPRD........LFEDVFEDLEKKYHED........ 292- 357 (38.41/14.75) ............KTLIKDTLKSGKITVVTTSvfEDFkSAV...LEEAACETiseinfklLFEE.LVE.RAKEKEEkEAKKRQR 361- 411 (60.58/27.42) DFTNLLYSF...KEITITSIWEDCKPLFEET..QEY.KSI...GDESSSRE........IFEEYITYL............... --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DRKKSRKHANSPDSDNESRHKKHKREHGDGSRRTGLNDDLEDGELGDDGEV 2) IFEEYITYLKE 3) NQDISDSHGYR 4) RKHRRRHQSSIDDVDSEKDEKEESRKSRRHG | 522 403 469 490 | 572 413 479 520 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab