<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18076

Description Pre-mRNA-processing protein 40a-like protein
SequenceMSCIISSIKKLARSEAKNAFKALLESVNVHSDWSWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKIEAEEKRIKQKKAREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRCLLLEKLDRLVVYQDYIRDLEKEEEEHKRIQKERIRRGERKNRDAFRKLLEEHIADGVLTAKTQWRNYCLKVKELPQYQAVASNTSGSTPRDLFEDVFEDLEKKYHEDKTLIKDTLKSGKITVVTTSVFEDFKSAVLEEAACETISEINFKLLFEELVERAKEKEEKEAKKRQRLADDFTNLLYSFKEITITSIWEDCKPLFEETQEYKSIGDESSSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKERHKKDESDSDNQDISDSHGYREERKKDKEKERKHRRRHQSSIDDVDSEKDEKEESRKSRRHGSDRKKSRKHANSPDSDNESRHKKHKREHGDGSRRTGLNDDLEDGELGDDGEV
Length572
PositionUnknown
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.07
Grand average of hydropathy-1.450
Instability index49.55
Isoelectric point6.52
Molecular weight68619.72
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18076
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.29|      26|      28|     412|     437|       1
---------------------------------------------------------------------------
  412-  435 (33.92/12.27)	....KEKA.KEKERKREEEKAKK.EKEREE
  436-  464 (28.00/ 8.57)	KEkrKEKEkKEKDREREKEKSKE.RHKKDE
  467-  490 (30.51/10.14)	SD..NQDI.SDSHGYREERKKDK.EKER..
  513-  539 (29.85/ 9.72)	SR..KSRR.HGSDRKKSRKHANSpDSDNES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     438.54|      65|      65|      86|     150|       2
---------------------------------------------------------------------------
   20-   82 (82.48/39.93)	.FKALLESV....NVHSDWSWEQAMREIIND..KRY.NAL...KTLGERKQ........AFNEYLGQRKKIEAEE.KRIKQKK
   86-  150 (104.83/52.70)	EFTKMLEEC...KELTSSTRWSKAISMLEND..ERF.NAV...ERVRDRED........LFESYMVELERKEKEN.AAEEHRR
  154-  212 (85.54/41.68)	EYRKFLESC...DFVKVNSHWRKIQDRLEDD..DRC.LLL...EKL.DRLV........VYQDYIRDLE...KEE...EEHKR
  228-  291 (66.70/30.91)	AFRKLLEEHiadGVLTAKTQWRNYCLKVKEL..PQY.QAVasnTSGSTPRD........LFEDVFEDLEKKYHED........
  292-  357 (38.41/14.75)	............KTLIKDTLKSGKITVVTTSvfEDFkSAV...LEEAACETiseinfklLFEE.LVE.RAKEKEEkEAKKRQR
  361-  411 (60.58/27.42)	DFTNLLYSF...KEITITSIWEDCKPLFEET..QEY.KSI...GDESSSRE........IFEEYITYL...............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18076 with Med35 domain of Kingdom Viridiplantae
Unable to open file!