<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18074

Description Cyclin-c1-2-like protein
SequenceMHVEFHNLTRVVATAVTYMRRVYSRKSMTEYDPRLVAPACLYLASKAEESTVQARLLVFYIKKLYADDKYRYEIKDILEMEMKILEALNYYLVVFHPYRSLSGLLQDAGLNDLSMTQLTWGLVNDTYKMDLMLVHPPHQIALACIYIASVLREKDTTVWYEELRVDMNVRNHEGKKQGMDSQQIEEPHTIARNIVTKGRGRKPHRKGKNGAASSSSGREESLKEEERLLPLNKTIMPGRWETNPPTPDPMCIVIQTGLQRSRDRAITRGDLQSSQHGWEHICNKMHVSGVTFLLWTICST
Length300
PositionKinase
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.08
Grand average of hydropathy-0.433
Instability index54.83
Isoelectric point8.83
Molecular weight34586.50
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
cell cycle	GO:0007049	IEA:UniProtKB-KW
cell division	GO:0051301	IEA:UniProtKB-KW
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18074
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.32|      38|     105|      23|      60|       1
---------------------------------------------------------------------------
   23-   60 (62.90/45.38)	YSRKSMTEYDPRLVAPACLYLASKAEESTVQARLLVFY
   72-  105 (43.56/29.20)	YEIKDILEMEMKILEALNYYLVVFHPYRSLSGLL....
  127-  160 (57.86/41.17)	YKMDLMLVHPPHQIALACIYIASVLREKDT....TVWY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.79|      15|      15|     187|     201|       2
---------------------------------------------------------------------------
  187-  201 (26.79/17.05)	PHTIARN.IVTKGRGR
  203-  218 (22.00/13.00)	PHRKGKNgAASSSSGR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18074 with CycC domain of Kingdom Viridiplantae
Unable to open file!