<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18073

Description Mediator of RNA polymerase II transcription subunit 25-like protein (Fragment)
SequenceMAEKQVIVVVESTAAMGPYWDTLQLDYLHKIVRCFGGNESTGQKPSVSNVEFALVTYNTHGCYSGILVQRTGWTKDPDVFLQWLSSIPFSGGGFNDAAIAEGLAEALMMFPPSQSGGPNQQNVDMHMHCILVAASNPYPLQTPVYVPQLPSLEQSESIDSDPGNQLYDAEAVAKVFPQFSVSLSVICPKQLPKVKAIYNAGKRNNRAAEPPVDPKATHFLILISEGFREARGALSRSGTNLPSNQSPVKVDVVSVTPVTGAPPTSLPSVNGSITNRQPIPAGNVTPATVKVEPVPVTSMVNGPAFPHNPSVPRVTSNGQGIPSLQTSSPSSVSQDIMTNNENAQDTKPTVSMLQPSRPANPAQANVNILNNLSQVRQVMNSAALSGGTSMGLQSMGQTPVAMHMSNMISSGTTSSGPTGQNVFSSGPPVMTSSGSLTASAQVGPNSGLASLTSATSNLTSSPNNGTSQPLANLQGTVSMGQQ
Length482
PositionUnknown
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.05
Grand average of hydropathy-0.197
Instability index50.99
Isoelectric point6.16
Molecular weight50350.08
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18073
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     235.01|      73|      76|     277|     350|       1
---------------------------------------------------------------------------
  277-  350 (122.79/51.29)	QPIPAGNVTPATVKV..EPVPVTSMVNGPAFPHNPSVPrVTSNGQGIPSLQTSS.PSSVSQDIMTNNENAQDTKPTV
  354-  429 (112.23/43.73)	QPSRPANPAQANVNIlnNLSQVRQVMNSAALSGGTSMG.LQSMGQTPVAMHMSNmISSGTTSSGPTGQNVFSSGPPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.91|      20|      20|     430|     449|       3
---------------------------------------------------------------------------
  430-  449 (35.13/18.26)	MTSSGS.LTASAQVGPNSGLA
  451-  471 (30.78/15.06)	LTSATSnLTSSPNNGTSQPLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.97|      44|     122|      99|     147|       4
---------------------------------------------------------------------------
   99-  147 (73.37/54.41)	IAEGLAEALMMFPPSQSGGP.NQQNVDmhmhcILVAASNPYPLQTPVYVP
  223-  267 (71.59/40.57)	ISEGFREARGALSRSGTNLPsNQSPVK.....VDVVSVTPVTGAPPTSLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18073 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GALSRSGTNLPSNQSPVKVDVVSVTPVTGAPPTSLPSVNGSITNRQPIPAGNVTPATVKVEPVPVTSMVNGPAFPHNPSVPRVTSNGQGIPSLQTSSPSSVSQDIMTNNENAQDTKPTVSMLQPSRPANPAQANVNILNNLS
2) VRQVMNSAALSGGTSMGLQSMGQTPVAMHMSNMISSGTTSSGPTGQNVFSSGPPVMTSSGSLTASAQVGPNSGLASLTSATSNLTSSPNNGTSQPLANLQGTVSMGQQ
232
375
373
482










Molecular Recognition Features






MoRF SequenceStartStop




NANANA