<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18072

Description U-box domain-containing protein 35-like
SequenceMNRAGIVEQCTIVPKDPDEFTKEIFRPYRVFCARKDIHCKDIVLEHGDVSKALIEYTSQSAIEHLVIGSSNKNGFLKRFKVVDIPGTVSKGAPDFCTVYIVGKGKIQSMRSASRPAPAFSPLQTQLSKSSSRSDRSETRMPIAAKVPERRSFEGPPRRSQDGADSFRSPFTRRRPNDKSYGELPMPDSDISFVSSGRPSTDRLFPSIYNHNYNSESSFSNPRLSYSSDTDGNYSFESINYGRRSIDIGTPDFSTFSNDSDGLSSSTSNMDDVEAEMRRLKLELKQTMEMYSTACKEALTAQQKAVELQRWKLEEERRLEEARMAEENALAVAEKEKAKSKAAIETAEAQKRIAELEAQKRISAEMKALREAEEKRKVVDALSSQDVRYRRYAIEEIEAATNFFADSLKIGEGGYGPVYKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFCRGKTPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPPSVADTVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARPPMGLTHHVGRAIEKGTFDEMLDPRITDWPVEEALGFAKMAIKCSELRRKDRPDLGKEVMPELNRLRELAESNDNHSMFSGFTSPSTQSQVSLQMDGSGSPLPYSGDSTRNTSSPL
Length719
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.07
Grand average of hydropathy-0.518
Instability index56.09
Isoelectric point6.89
Molecular weight80425.24
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18072
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.31|      28|      28|     204|     231|       1
---------------------------------------------------------------------------
  166-  202 (31.35/12.77)	FRSPFTRRRPNDK.SYgelpmpdsdisfvSSGRPS.....TDR
  204-  231 (52.91/25.98)	FPSIYNHNYNSES.SF.............SNPRLS.YSSDTDG
  233-  261 (38.05/16.88)	Y.SFESINYGRRSiDI.............GTPDFStFSNDSDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     290.30|      90|     138|     434|     570|       2
---------------------------------------------------------------------------
  434-  535 (144.13/195.25)	PDAQQ.GRSQFQREVEVLSCIrhpnMVLLLGACPEYGCL..VYEHMANGSLDDCLFCRGKTPPLPWQLRF.KIAaeIGTGLLflhQTKPEPLVHRDLKPAnilLDR
  575-  668 (146.17/94.79)	PEYQQtGMLGVKSDIYSLGII....FLQILTARPPMGLThhVGRAIEKGTFDEMLDPRITDWPVEEALGFaKMA..IKCSEL...RRKDRPDLGKEVMPE...LNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.78|      29|      37|     313|     349|       3
---------------------------------------------------------------------------
  273-  301 (43.35/21.83)	EAEM.RRLKLELKQTMEMYSTACKEALTAQ
  320-  349 (41.43/39.80)	EARMaEENALAVAEKEKAKSKAAIETAEAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.56|      16|      38|     105|     125|       4
---------------------------------------------------------------------------
  105-  125 (22.63/21.72)	KIQSMRSASRPapafsPLQTQ
  145-  160 (29.93/15.43)	KVPERRSFEGP.....PRRSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18072 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DNHSMFSGFTSPSTQSQVSLQMDGSGSPLPYSGDSTRNTSSPL
2) RSASRPAPAFSPLQTQLSKSSSRSDRSETRMPIAAKVPERRSFEGPPRRSQDGADSFRSPFTRRRPNDKSYGELPMPDSDISFVSSG
677
110
719
196










Molecular Recognition Features






MoRF SequenceStartStop




1) INYGRRSIDIGTP
2) RLFPSIY
238
202
250
208