<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18071

Description Mediator of RNA polymerase II transcription subunit 13-like protein (Fragment)
SequenceRGHPAFEFVFAATEEAIFVHVIVSSKNIRMLSTGDLEKLLKHSTETTYRLPVIVSPHGIRGSLTGCSSSDLVKQSYFSSSSKFRVSNGIIGLPYHISQGVGCQLRGQNCFVEVSLGFPRSETDKALQSNKNLVRNLPKSPVTGHSDHKGSPDHLSDNEKTFLYPAESVLVPVFQTSLARSSLRRFWLQNWMGPSLTGSSSFIHCAGNVESTDDPWNEYNGSRTQNSYDSSSNSNNSSISSLSASSSDSDYKIKGPNELEADADSLACRQSMMSSADRLGSDGPKLVEHMVSISFGITIQGSKRSRTGVTQLLSTATNIPGQDAYMSDFGSMEVNNSVITSFDEPIGSYWDWGDEENKGLVMDIGALLSEFGGFGDFFESEKLPFGEPPGTAESQALVLSAPDCGDFNSSPVGTNVMDVSDQILLPVGFSSFESFNPTPPALMEECLNKDQDNLNNSMSMDPTNETQMLYTGEFDHIIKAEAIMTFAPEFGAVEAPTSGLSTTLFRSPYFPSSRKAESSNSCSNNYLYGAEPPSSPYIEGSDGKNGLVINTNTCSGKHDTSMTLHSKNYYTFVESRKDINDKKPVACIVNSIAKSEGTVQPPFSNIGSNASVKSGLRKMTEGTKDAEHFTLSAKTLLATDVTCAMLQASMCRSRHTLLSSGNNLIPVGLNRSTGVTFSNQLPTDPSTTTDNISGKYEVKKKENIPVRIAGDIDGVLDGHLNAPAPVGVWRSVGASKVVKPSNSPNVEVGPSFSHNSFNEEGILSYVQRKPLQELLDGIALLVQQATSFVDLALDADCGDGPYGLLALQEQWRRGFCCGPSMVHAGCGGTLASSHSLDIAGLELVDPLSSDLHASTVISLLQSDIKTALKSAFSNLEGPLSVTDWCKGRNQLGDTGSIVDGVSAESSISECRDSSEPLSPSQSSVCGSSSFKVSSMMDSAKADDSQRRSAQDMCNSESEQQLCSRLKPTLIAVPFPSILVGLVLPLYSIGCCGHNHGGTLWLFSTAQYDKAVQVRVVLVVLFFVVQ
Length1024
PositionKinase
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.07
Grand average of hydropathy-0.251
Instability index50.44
Isoelectric point5.12
Molecular weight109949.65
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18071
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     431.66|     155|     185|     589|     773|       1
---------------------------------------------------------------------------
  582-  767 (214.75/170.89)	KPVACIvNSIAksegTVQ..PPFSNIGSNASVKSG...LRKMTEGTKdaEHFtlsaktllatdvTC..AMLQASmC....RSRHTLLSSGNNLI.PVG..LNRSTGVTFsnqLPTDPSTTTD....NISGKYEVK...KKENipvRIaGDIDGVLDGhLNAPAPVGVWRsvGASKVVKPSNSpNVEVGPSFSHNSFNEEGILSYVQR
  768-  945 (216.91/113.45)	KPLQELlDGIA...lLVQqaTSFVDLALDADCGDGpygLLALQEQWR..RGF............CCgpSMVHAG.CggtlASSHSLDIAGLELVdPLSsdLHASTVISL...LQSDIKTALKsafsNLEGPLSVTdwcKGRN...QL.GDTGSIVDG.VSAESSISECR..DSSEPLSPSQS.SVCGSSSFKVSSMMDSAKADDSQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     607.98|     127|     129|     255|     383|       2
---------------------------------------------------------------------------
   24-  148 (111.20/65.96)	SSKNiRMLST.GdlEKLLKHSTETTYRLPVIVSPHGIRGSLTGCSSSDLV..KQSYFSSSSKFRVSNG...IIglpyhisqgvgcqlrgqncfveVS.LGFP.RSE.....TDKALQSNKNLVRNLPK..SPVTGHS.D....HK...........................
  150-  272 (150.79/97.04)	.SPD.HL.SD.N..EKTFLYPAE.SVLVPVFQTSLARSSLRRFWLQNWMGPSLTG.SSSFIHCAGN......V......................ES.TDDPWNEYngsrtQNSYDSSSNSNNSSISS.LSASSSDS.DY.......kikgpnEL...EADADSLACRQSMM
  273-  401 (198.79/126.02)	SSAD.RLGSD.G..PKLVEHMVSISFGITIQGSKRSRTGVTQLLSTATNIPGQDAYMSDFGSMEVNNS...VI......................TS.FDEPIGSY.....WDWGDEENKGLVMDIGALLSEFGGFG.DFFESEKLP....fgEP...PGTAESQALVLSAP
  402-  526 (147.21/90.97)	DCGD.FNSSPvG..TNVMDVSDQILLPVGFSSFESFNPTPPALMEECLN.KDQDN.LNNSMSMDPTNEtqmLY......................TGeFDHIIKA...........EAIMTFAPEFGAVEAPTSGLStTLFRSPYFP........ssrKAES.SNSCSNNYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.04|      25|     435|     545|     569|       3
---------------------------------------------------------------------------
  545-  569 (46.40/23.00)	GLVI...NTNTCSGKHDTSMTLHSKNYY
  979- 1006 (43.64/21.27)	GLVLplySIGCCGHNHGGTLWLFSTAQY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18071 with Med13 domain of Kingdom Viridiplantae
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