<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18063

Description Pre-mRNA-processing protein 40c-like protein
SequenceMSDSVTLDFSKVSSASNNQHPAAAPTSISSMPPPSDPNYRPTTSWMPTAPTFPVHPVMPGTPGPPGLAKPVIIPNPAAQSANTDFSSAAVLRQNMPTAAIASDPNAPHRGLPYPPIPSMVAPPQGYWLQPPQMGGALRPPFNQYPPAFPGPFPFPARGVALPAVPVPDSQPPGVTPVGAASISVPSAPGHLLRGTSGMQTEVISAHTDDKHKLNTTVTQNEDASNQLDAWTAHKSEAGIVYYYNALTGKSTYDKPPGFKAEAHQVSVQPTPVSMVDFPGTDWQLVSTSDGKKYYYNNRTKDGLVAEDGCVREWSDEECMWDLPWRHSTFQEKIIIRLPPNSLSFKTEMTSCWQIPNEVAELKKKQDGDVTKDHLMPVPNTNVLSDKGSGMVTLNAPAITTGGRDAAAPKPSIVQSSPSALDLIKKKLQEYGAPVTSSSIPTLSVLPGSESNGSKATDSTAKSLQNDNSKDKPKDANGDANLTDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRTLFEHYVKNRAEEERKEKRAAQKAAVEGFRQLLDEASEDINDHTDYHTFRKTWGNDPRFEALDRKEREHLLNESGKQVLLILNLDQKIDPCNQPLAIANARVLPLKKATEEKAQAVRDAAAAGFKSLLKEQGDITFNSRWSRVKESLRDDPRYKSVKHEDRELLFNEYISELKAAEHAAERETRAKREEQEKLRERERELRKRKEREEHEMERVRIKIRRKEAVTSFQALLVERIKDPTASWTESKPKLEKDPQGRATNSDLDSADMEKLFRDHVKMLQERRAHDFRALLAEILTAEAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVESKDREALWRRYVEDMLRRQKSSNDSKEEKYTDARSRKTLESSKHPLESGRSHERR
Length927
PositionUnknown
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.06
Grand average of hydropathy-0.845
Instability index47.59
Isoelectric point7.34
Molecular weight103567.87
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18063
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     128.40|      21|      22|     130|     150|       1
---------------------------------------------------------------------------
   32-   55 (31.84/10.81)	P.PPSDPNYRP..TTSWMPtaPTFPvH
   64-   81 (27.00/ 8.14)	P.P...GLAKP..VIIPNP..AAQS.A
  130-  150 (45.69/18.47)	P.PQMGGALRP..PFNQYP..PAFP.G
  153-  173 (23.87/ 6.41)	PfPARGVAL.PavPVPDSQ..P..P.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     440.92|      67|      68|     783|     849|       2
---------------------------------------------------------------------------
  518-  589 (78.88/44.93)	KWEKELPKI.VFDPRFKAIPSY..SA.RRTLFEHYVKnR......A.EEERKekraaqkaavEGFRQLL....DE...ASEDINDHTDYH
  594-  658 (67.47/37.34)	TW........GNDPRFEA....LDRKEREHLLNESGK.QvllilnL..DQKI..........DPCNQPLaianARVLPLKKATEEKAQAV
  681-  723 (64.72/35.52)	RWSRVKESL.RDDPRYKSVKHE....DRELLFNEYIS.E......L.K..................................AAEHAAER
  727-  778 (57.85/30.95)	AKREEQEKLrERERELR.KRKEREEHEME...RVRIK.I......R.RKEAV..........TSFQALL....VERI............K
  783-  849 (106.90/63.55)	SWTESKPKL.EKDPQGRATNSDLDSADMEKLFRDHVK.M......L.QERRA..........HDFRALL....AEILTAEAASQETDDGK
  854-  910 (65.10/35.76)	SWSTAKRLL.KSDPR....YNKVESKDREALWRRYVEdM......LrRQKSS..........NDSK.......EEKYT.DARSRKT....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.32|      11|      81|      98|     110|       4
---------------------------------------------------------------------------
   98-  108 (19.38/12.68)	AAIASDPNAPH
  114-  124 (21.94/ 6.98)	PPIPSMVAPPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.88|      16|      20|     354|     370|       5
---------------------------------------------------------------------------
  354-  370 (23.34/21.89)	IPNeVAELKKKQDGDVT
  377-  392 (28.54/21.05)	VPN.TNVLSDKGSGMVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.28|      38|      68|     236|     283|       7
---------------------------------------------------------------------------
  230-  278 (56.04/59.29)	WTahksEAGIVYYYNaltgKSTYDkppGFKAEAHQVSVQPTPVSMVDFP
  282-  323 (71.24/43.27)	WQlvstSDGKKYYYN....NRTKD...GLVAEDGCVREWSDEECMWDLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.37|      13|     160|     504|     516|      10
---------------------------------------------------------------------------
  504-  516 (24.75/15.47)	FKEMLKERGVAPF
  666-  678 (23.63/14.47)	FKSLLKEQGDITF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18063 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DSVTLDFSKVSSASNNQHPAAAPTSISSMPPPSDPNYRPTTSWMPTAPTFPVHPVMPGTPGPPGLAKPVIIPNPAAQS
2) EHAAERETRAKREEQEKLRERERELRKRKEREEH
3) KKKQDGDVTKDHLMPVPNTNVLSDKGSGMVTLNAPAITTGGRDAAAPKPSIVQSSPS
4) NTDFSSAAVLRQNMPTAAIASDPNAPHRGLPYPPI
5) RRQKSSNDSKEEKYTDARSRKTLESSKHPLESGRSHERR
6) SWTESKPKLEKDPQGRATNSDLDSADMEKL
7) TSSSIPTLSVLPGSESNGSKATDSTAKSLQNDNSKDKPKDANGDANLTDTSSDSEDEDSGPSKEECINQFK
8) VALPAVPVPDSQPPGVTPVGAASISVPSAPGHLLRGTSGMQTEVISAHTDDKHKLNTTVTQNEDASNQLDA
3
718
362
82
889
783
435
159
80
751
418
116
927
812
505
229










Molecular Recognition Features






MoRF SequenceStartStop




NANANA