<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18059

Description U-box domain-containing protein 35-like (Fragment)
SequenceSKHKEMSAKISVCTPRFCTVYAVSKGKLSIRPSDMQIDESITDDASEISFSSSSSSNYTSTTQTDSGSVASYAALHSSSLATQRFQALSSMNQNLLNTTPSLNETNHSRGQSIDLGRGNVATSSARNSDFDRGLSRASSFRSIVSDTDTWIYDQNSLKDAPLASKLASPNRQENFNLELEKLRIELRHVQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAQELARQEIEKYEVAAREAAYLKECAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYRKFMWDEIVSATSSFSEDLRIGMGAYGMVYKCTLHHTTVAVKVLHSAGISQSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFQKNSTIPIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILTSDDLSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPATAITHVVETAIEDGNLTDILDTKAGSWPFQETLDLARLALSCAELRRRDRPDLLDHVLPTLEKLKEVADRAHYSASMVTIKPKAPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLKENEKSPMTNMALPHKILIPNYTLLSAILEWKSKEI
Length660
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.06
Grand average of hydropathy-0.379
Instability index45.35
Isoelectric point6.15
Molecular weight73582.64
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18059
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.84|      53|      67|      11|      67|       1
---------------------------------------------------------------------------
   11-   67 (80.87/61.88)	SVCTPRFCTVYAVSKGKLSIRPSDMQIDESITD..DASEISFSSSSSSNytSttQTDSG
   79-  133 (84.97/52.63)	SLATQRFQALSSMNQNLLNTTPSLNETNHSRGQsiDLGRGNVATSSARN..S..DFDRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.87|      17|     380|     146|     162|       5
---------------------------------------------------------------------------
  146-  162 (33.39/21.71)	DT..DTWIYDQNSLKDAPL
  514-  526 (15.93/ 6.75)	....ETAIEDGN.LTDI.L
  527-  544 (23.55/13.28)	DTkaGSWPF.QETLDLARL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18059 with Med32 domain of Kingdom Viridiplantae
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