<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18051

Description U-box domain-containing protein 33-like (Fragment)
SequenceYGKNELPHLEDLQPNSARTAVCSEIRSLDLGEIIETEATNSSKSSSCSSYCSPQNSTAVYLDAYSEVMEERINSQLIETQREAEAATDESFAELIKCRRSEAEAAEAMQKVKLFESAHAHEVELRKEAEVALRDTVLEQQKLLEESERISGELQMTMRNVALLDSRAKETIRRRDEAAHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQIGAAHYNGVIGFAEELPELAEFSLSDIENATCNFSESFKIAQGGFGCIYKGEMLGRTVAIKKFHQQNVQGPAEFHREVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQNYLFRKSNIIPLTWNIRTRMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLGTEESLYSPSSSFRLSTEPKGAFTYTDPEFQRTGVLTTKSDIYSFGLIILQLLTGRTPVGLAVLVRHAVSFGKLSSILDSSAGEWPLSVASRLVELGLQCCAQNRRSRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLNHLLLTPNHSIRLAIQDWLCKS
Length597
PositionTail
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.07
Grand average of hydropathy-0.290
Instability index52.48
Isoelectric point5.48
Molecular weight67420.81
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18051
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.34|      19|      25|     441|     459|       1
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  441-  459 (32.88/20.23)	SFGLI..ILQLLTGRTPVGLA
  467-  487 (29.46/17.41)	SFGKLssILDSSAGEWPLSVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.53|      12|      17|      75|      86|       2
---------------------------------------------------------------------------
   75-   86 (20.97/ 9.61)	QLIETQR.EAEAA
   93-  105 (17.56/ 7.15)	ELIKCRRsEAEAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.96|      13|      26|      15|      27|       3
---------------------------------------------------------------------------
   15-   27 (22.53/14.13)	NSARTAVCSEIRS
   40-   52 (24.43/15.90)	NSSKSSSCSSYCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.60|      25|      26|     148|     173|       4
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  148-  173 (33.74/23.63)	RISGELQMTMRNVALLdSRAKETIRR
  176-  200 (37.86/21.72)	EAAHELLLIQTSISTL.WQERQQIRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.40|      27|      29|     332|     360|       8
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  334-  360 (47.72/38.06)	FRKSNIIPLTWNIRTRMI.AEISSALC.F
  364-  392 (38.68/22.24)	FKPEAIIHGDLKPETILLdSSLSCKICeF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18051 with Med32 domain of Kingdom Viridiplantae
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