<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18049

Description Fibrillarin
SequenceMGPPTRGRGGFRGGRGGDRGGRSFGGGRGGGRGGDRGTPFKARGGGRGGDRGRGGRRGRGGGGGGRGGGMKGGNKVIVVPHRHDGIFFAKGKDDILLTKNLVPGETVYNEKRLTVQNEDGTKVEYRIWNPFRSKLAVAVLAGVDNIWIKPGAKVLYLGAASGTSVSHVSDIVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVSMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTAPADAVFESEVNKLKADQFKPMEQVTLEPFERDHACVVGGYRMPKKKKVAE
Length314
PositionUnknown
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.07
Grand average of hydropathy-0.435
Instability index28.76
Isoelectric point10.18
Molecular weight33483.85
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18049
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.38|      16|      16|      12|      27|       1
---------------------------------------------------------------------------
    6-   21 (36.86/10.99)	RGRGGFR.GGRGGDRGG
   22-   38 (32.35/ 8.88)	RSFGGGRgGGRGGDRGT
   60-   73 (31.17/ 8.32)	GGGGGGR.G..GGMKGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.66|      17|      17|     195|     211|       2
---------------------------------------------------------------------------
  195-  211 (29.90/24.65)	AKKR..TNVIPII.EDARHP
  212-  231 (19.76/13.99)	AKYRmlVSMVDVIfSDVAQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.46|      16|      19|     112|     130|       3
---------------------------------------------------------------------------
  112-  130 (21.36/19.97)	RLTVQNEDGtkVEyRIW.NP
  134-  150 (24.10/11.51)	KLAVAVLAG..VD.NIWiKP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18049 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MGPPTRGRGGFRGGRGGDRGGRSFGGGRGGGRGGDRGTPFKARGGGRGGDRGRGGRRGRGGGGGGRGGGMKGGNK
1
75










Molecular Recognition Features






MoRF SequenceStartStop




1) MGPPTRGRGGFRGGRGGDRGGRSFGGGRGGGRGGDRGTPFKARGGGRGGDRGRGGRRGR
1
59