<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18020

Description Mediator of RNA polymerase II transcription subunit 12-like protein
SequenceMRHTLASVILRLLGSRIVFEDANILFNATHSSLSKKDGESPFEVASAAFVDSSAQGLFDRLLLILHGLLSSSPPSWLRLKPVSKTSNAPTREFSGFDRELLETLQNHLDSMQLPDSIRWRIQAAMPVLPRSTLYSFSCQPSSVPNSSIVSLQPRIKNSGFNSSSLATPQRSAVPLSRTAAASGKSKQQDTDFEVDPWTLLEDGAGSYPSANKGSGDLVNIHAASWLKGAVRVRRTDLTYIGAVDDDDS
Length248
PositionKinase
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.07
Grand average of hydropathy-0.234
Instability index55.90
Isoelectric point6.97
Molecular weight26942.98
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18020
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.15|      23|      37|      58|      80|       1
---------------------------------------------------------------------------
   58-   80 (41.99/26.59)	FDR.LLLILHGLLSSSP.PSWLRLK
   96-  120 (35.15/21.15)	FDReLLETLQNHLDSMQlPDSIRWR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.78|      28|     148|      28|      56|       2
---------------------------------------------------------------------------
   28-   56 (41.60/27.69)	ATHSSLSKKDGESPFEVASAAFVDSSAqG
  150-  172 (25.54/11.56)	....SLQPRIKNSGFNSSSLATPQRSA..
  179-  205 (43.64/24.72)	AAASGKSKQQ.DTDFEVDPWTLLEDGA.G
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18020 with Med12 domain of Kingdom Viridiplantae
Unable to open file!