<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP18006

Description Uncharacterized protein
SequenceMDHYSSPGGTWTMIPTPNSNSQIQSQSNQDLYLQQQQQFLHQQSFQQPQTPNSQFQQQQQLYQQQQQQQQQQLILQQQQQQPQQQQQQNLHQSLASHFHLLNLVENLAELVEHGNPDQQSDTLIAELSNHFDKCQQLLNSISASISTKAMTVEGQKKKLEESEQLLNQRRDLIANYSKSVEELVGSEP
Length188
PositionMiddle
OrganismTrifolium pratense (Red clover)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Trifolium.
Aromaticity0.05
Grand average of hydropathy-1.085
Instability index75.15
Isoelectric point5.06
Molecular weight21732.51
Publications
PubMed=24500806
PubMed=28382043

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP18006
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.63|      23|      27|      34|      60|       1
---------------------------------------------------------------------------
   15-   45 (35.06/ 7.89)	P.TPNSNSQIQSQsnqdlylQQQQQfLHQQSF
   48-   74 (37.56/12.73)	PqTPNSQFQQQQQ....lyqQQQQQ.QQQQLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.86|      17|      31|      81|      98|       2
---------------------------------------------------------------------------
   81-   98 (27.28/16.46)	QPQQQqQQNLHQSLASHF
  115-  131 (29.59/13.58)	NPDQQ.SDTLIAELSNHF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.05|      22|      27|     132|     153|       3
---------------------------------------------------------------------------
  132-  153 (35.79/22.33)	DKCQQLLNSISASISTKAMTVE
  160-  181 (35.25/21.89)	EESEQLLNQRRDLIANYSKSVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP18006 with Med9 domain of Kingdom Viridiplantae
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