<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17990

Description Uncharacterized protein
SequenceMLARARRSEHDGEERTFLLLCSSLAAIPPARDWSMAIQEEGERAGSADAPLTVGLALGGSKSSTYVLQWALAKFASGKDKDENKSAPTFKLIHVLTPVLTVPTPRNYPVDKVRPEIADTHAKEVQVQAQEMLLQCRNMCDENKVEVEVLLVKGNDVGDAISNLVAQYQIQVLVVGNTTSRCAFTRKSSRNKTSSKICKSVPSSCTTYIVSKDGLSSVYSPGLGSDTSDSQVHSGEMSPRSDLNDSSGRTLLGLPSLPRSNLASENLKSSSSSKHDGSFTLYDYLSGSASVYADQDRTITSCTDGESSISSKVQASDKVPTQGSSLQALMLSDKVPTQKNSLQGLMLSDSKDDVNTELEKLRLELRHIQGTYKLVQDESVDASHQVVELAAMRVEGKAQLRDIQSRVDKANDEVQEDKAHRCATEEVVTHFKDLVRAEVMQKNRLLIKASKDADQKSRLEELFVLRGNLYSTFTWEEIDNATSSFSESHKIGTGSNGTVYKGHLKHLDVAIKILHSDDSSSTKHFNQELDVLRRIRHPHLLMLLGALPDRGCLVYEYMENGSLADRLQCINGTQPIPWFHRFCIAWEIVSALVFLHSTKPNPIIHRDLKPENVLLDRNLVSKIGDVGLSTLVPLKDSSSSGTMYKNTGLAGTLFYIDPEYHRTGQVSVKSDTYALGMVILQLLTARSPIGLPELVERAVEDGQLMDVLDGSAGNWPAKEAYDLAHLGLSCLEMRSKDRPDLKNMVAVELERLKNIAGAASEPVPGPPSHFVCPILKEVMQDPCIAADGHTYERNAILMWLSKHELSPVTKALLPNKTLVSNHSLLSAISSWRSQGGGL
Length837
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.322
Instability index40.55
Isoelectric point6.17
Molecular weight91812.08
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17990
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.05|      15|      15|     315|     329|       1
---------------------------------------------------------------------------
  315-  329 (28.77/19.59)	SDKVPTQGSSLQALM
  331-  345 (29.28/20.07)	SDKVPTQKNSLQGLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.56|      18|      20|     137|     154|       2
---------------------------------------------------------------------------
  123-  140 (30.74/22.02)	EVQVQAQEMLLQCRNMCD
  141-  158 (28.82/20.18)	ENKVEVEVLLVKGNDVGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.55|      15|      15|     215|     229|       3
---------------------------------------------------------------------------
  215-  229 (27.06/16.89)	SSVYSPGLGSD...TSDS
  233-  245 (22.66/12.75)	SGEMSP..RSD...LNDS
  254-  271 (17.84/ 8.21)	PSLPRSNLASEnlkSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.75|      69|     143|     494|     574|       4
---------------------------------------------------------------------------
  494-  574 (105.59/105.69)	SNGTVYK.....GHLKHLDVAikiLHSDDSSSTKHFNQELDV....LRRIRHPhllmlLGaLPDrgcLVYEYMENGSLADRLQCINGTQP
  638-  715 (114.16/78.95)	SSGTMYKntglaGTLFYIDPE...YHRTGQVSVKSDTYALGMvilqLLTARSP.....IG.LPE...LVERAVEDGQLMDVLDGSAGNWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.35|      23|      95|     358|     380|       5
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  358-  380 (36.51/22.15)	EKLRL.E....LRHIQGT.YK.LVQDE.SVD
  389-  416 (22.63/11.25)	AAMRV.EgkaqLRDIQSR.VD.KANDEvQED
  417-  440 (26.42/14.23)	KAHRC.A....TEEVVTH.FKdLVRAE.VMQ
  454-  478 (25.79/13.73)	QKSRLeE....LFVLRGNlYS.TFTWE.EID
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17990 with Med32 domain of Kingdom Viridiplantae
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